Array 1 44091-42471 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYQT01000027.1 Streptococcus agalactiae strain GCH40 27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 44090 36 100.0 30 .................................... ATGCGGTCACTCATATAAGACATCTCCTTT 44024 36 100.0 30 .................................... CCCAGTTGCAATGACTGCGCCAGAAGTCGG 43958 36 100.0 30 .................................... TAATGGTTTATCTCTTTTTTCATCTGTTAT 43892 36 100.0 30 .................................... AATTATCAATGTTTACAACTGTTTTAGTTT 43826 36 100.0 30 .................................... TAAAATCCTGAAACAGAATGGGATTGATAT 43760 36 100.0 30 .................................... AAAATCAGAACGCCTTATTTGAAGCAGTTA 43694 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 43628 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 43562 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 43496 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 43430 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 43364 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 43298 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 43232 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 43166 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 43100 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 43034 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 42968 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 42902 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 42836 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 42769 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 42703 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 42638 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 42572 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 42506 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //