Array 1 1100223-1101043 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051698.1 Escherichia coli strain SCU-152 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1100223 28 96.6 32 .....-....................... TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 1100283 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 1100344 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 1100405 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 1100466 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 1100527 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 1100588 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 1100649 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 1100710 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 1100771 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 1100832 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 1100893 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 1100954 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1101015 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1126747-1127509 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051698.1 Escherichia coli strain SCU-152 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1126747 29 100.0 34 ............................. CCCGCGCTTATTTGCTGTCGTCGCGCTTAGTGGT 1126810 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 1126871 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 1126932 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 1126993 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 1127054 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 1127115 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 1127176 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 1127237 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 1127298 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 1127359 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 1127420 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1127481 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 13 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //