Array 1 81991-81047 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBO01000005.1 Cronobacter malonaticus strain SD16 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81990 29 100.0 32 ............................. CGTTTTTTCATCAACTTACAATTGATTAAGGA 81929 29 100.0 32 ............................. CCAATCGCCGCAACGTTCATTATCGCGCTGCG 81868 29 100.0 32 ............................. CGTATAGCGCATTACGGAGGTGCAATATGCAG 81807 29 100.0 32 ............................. CGCTGGATAATTTCTCTCTTGTTCCTGGAAGC 81746 29 100.0 32 ............................. CAGACCGCGTACGACGGGATGCCGAAAATCAG 81685 29 100.0 32 ............................. ATCTGGCAGGAGAGCGGGGGTAATCATTACGG 81624 29 100.0 32 ............................. CCGTCCCAGGACATCCCCTCGGTGTGAGACGG 81563 29 100.0 32 ............................. GTGCCGAATTACTGCGGCTGGCGCGGCTAGGC 81502 29 100.0 32 ............................. TCCAGGACATGAAAGCTGACGCGCAGAAAAAA 81441 29 100.0 32 ............................. CGCGCTATCGACGGCCACACACACCGGCAGAT 81380 29 100.0 32 ............................. ACGCAGCGTTTATCGAGCGACTGATACTGCGA 81319 29 100.0 32 ............................. ATAAAAAAATAATTGATGAAATAAATGCTTTA 81258 29 100.0 32 ............................. AAGTCTATCTCGGTTTTTCACCCGAAATAGGC 81197 29 100.0 32 ............................. AACGTATCGAGAGAGACTTTAACAGTATGTCC 81136 29 100.0 32 ............................. ACGCCGAATACGCTGCGGCAGACGCGTGGCAG 81075 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAAATGATCTGGCATCAGATAAATAAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATCATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATCCCGGTGGATTTGGATGGCCTGAGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAGCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GTATATCAATAACGTGGTTTATTGAATATGTGCAGGAGCATTATTTTATATGGCAATATATAAAAAACAATTCTGAGTTGGGGTATAAAGATAACGGCAATGCTTAAAGAATTAAAGATTATTACATCGCTTCTATTTTTGCTGATTATATTTATATGATTTTTATTGCTGGTTTTTATGTTGGTTAACTTAATTTCAAAGTTGAATACAGTATTTATTAATTTGTGCATGTAGAATTTATATGTTCTTCATTTAATAGGACTTTATAAATGACATGGGATAAATATGCAGCAATACGTCATGCACAGGATCGTGCCTACAGTAATAGCTATCATAAGTGCGAGTTATTTGTTAAAGAAGCTATTATTGCTGGTGGGGTTGATATACATCCAACGCCTTCTGCAAAAGATATGGGTAAGGCATTGATTCAAGCTGGTTTCTATGAGGTTTATGGTGAGCCCGTAGCTGGTGATGTCGCTGTTATTAGCTCGATCCCCGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 109471-108710 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBO01000005.1 Cronobacter malonaticus strain SD16 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109470 29 100.0 32 ............................. TAAATTGCACGGATGGCATGCGGGGACGATAT 109409 29 100.0 32 ............................. CAGGGAGGCTGAGGCTCAATATCAGCGCGCTA 109348 29 100.0 32 ............................. TTATCGGCTAATTCAGCCGTTCCGCGTTTAAC 109287 29 100.0 32 ............................. GAATACACAGACGACCAGTTATACGACGCGCT 109226 29 100.0 32 ............................. CGACAAAATAAAAACAAAAAACTTTGGCGACA 109165 29 100.0 32 ............................. GACTTTTAACAGGGGCGATTGCTCATCCGATA 109104 29 100.0 32 ............................. TGGGCCGTTCAGCTCCGCTCTTACGTCCTGAA 109043 29 100.0 32 ............................. ATTAACTCCATATCCTTACCAGTTCTTCCTGA 108982 29 96.6 32 ........T.................... CCAGGAAGACATGCTCGACCAGATTATGCGCG 108921 29 100.0 32 ............................. GCTGGGCCTGTATGACCTGCCGGAATACCAGA 108860 29 96.6 32 ............A................ AACTATCTATTTCCTGATAAATGGGGGATTTA 108799 29 96.6 32 ............A................ AACACGTCGTCGTAGGCTTTTCCTGGCCACCA 108738 29 93.1 0 ..........G..............G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.7 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CGGCAGCGTCAATACAGACTTCTTTTGAGAGCCTGTTCTTCACGCCTGTCAATCGCCGCCCCATTTCCCCTCACATTCTTCATCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //