Array 1 370188-370887 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000056.1 Streptomyces buecherae strain AC564_RSS886 NODE_59_length_397327_cov_61.617413, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 370188 29 79.3 32 TGAT.G.....A................. GCGCGCGCCACCGTCCCCTCCGTCGAGTAGGT 370249 29 100.0 32 ............................. ATGATGAGCAGCGGCGCCAGCACGGCCACCGC 370310 29 100.0 32 ............................. GTGACAGCCGTCGCGTGCGACACCCCGTCAGC 370371 29 100.0 32 ............................. CCGTAGTACGCCTCGGCGAGGATGAGGACGAG 370432 29 100.0 32 ............................. ACGCCGGACATGCTGGAGACGCTGGAGTCCGG 370493 29 100.0 32 ............................. GTCTGCCGCGCGCCGCCGTCGAGGCCGCGCTC 370554 29 96.6 32 .....................A....... TACGCGCAGCTAGCGGAAGCGCTGGCACGCTG 370615 29 100.0 33 ............................. CGCGAGCGCCTCATGCTCCAGCTCGCTGGCCCG 370676 29 96.6 32 .........................C... TTCCTGGACACGAACCGCCGACTGGCCGCGGG 370737 29 93.1 33 ...................G..A...... GCGTACGCCGCGTGCCGTGGCCGCCGCCTCCAG 370798 29 93.1 32 ............T.....A.......... TTTGCGCGGTCGGTGACTTTGCCGCGGTGTGG 370859 29 89.7 0 ............T....C.........T. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 95.7 32 GTCCGCTCCGCGCGAGCGGAGGTGTTCCG # Left flank : CACCTGGACGACGGCACCACCCTGGAAGTCACCCGGACCGCCAGCGACGGCACATCCAACGCCAACTCCCTGCTCTACGGCGCCGCCTGGCGAGCAGCCAAGGCGCTCGGATACCGCCGGTTGATCACCTACACGCAGGCCGGTGAGAGCGGCGCATCGCTGCGCGGCGCTGGTTGGCGCGTCCTGGCCCACCGCCCTCCTCGGCCGGGCTGGGACCGTCCCTCCCGCCCGCGGACCGACCACGGCACCGCGCATGTCGCCCGCACGCTGTGGCAAGCCCCCTGACCCGCCCGCTGGCCCTGACCCGCCTCTGCGTCCTCACCGAACGGGAGACTCCGCCATTTCCGAACACCACATCGACCTACTGCAACAGATCGATCATCTCCGCTACCTGGGAGATGAGTTCGCCACCTTGCACACCACCGTCAATGCACTGGAGGCACGACCCGGCAGCGAGTTGCTGCAACGACTGGCCAAGCTGATCGGCACCACCCAGGTGT # Right flank : GACGCCCGAAGTTTCATCTGCACGCAGAGTGACAGCACAAGGCGAGCCTGTATCTCGCTACGACACTCCCCGCCCTAGACCCGGTGGGGAGAATCTGGGGTCATTAAGAGGCGAACCTACTGGTGAGCGGGGTGCGGTAGACGACTTCAAGAAAATCTCTTCGCCCTAACCGCGAGGCAAGTCAACTCGCGAGGCCGAGGTCGATGATCTTTGCCGCTTTCCCGATCGAGCCGGGCATGAGATGGCGGTAGACCTTGAAGGTGACGTCCACACTCTTGTGCCCCATCCACTCGGCGACGTCGGTGATAGGGATGCCGTGGGACAAACAGTTGGAAGCGAAGAAATGGCGGAAGCTGTAGAGCACCATCCCTTCAGGCATGTCAAACACTCTCCGCCTCTTGATCCGCTGCCACTGATTCGACAGGCAGTAGTATGGGAACGTTTGGCGTGGATCACGAGGATGGTGCAGCAGGTACCCCCCGACCGTGCCATGCTTGCCC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCGAGCGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCACGCGGAGATGTTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5707-5918 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000050.1 Streptomyces buecherae strain AC564_RSS886 NODE_52_length_28038_cov_62.875454, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5707 29 96.6 32 ...........A................. CTGTCGCCGGCGCACCGGGGGATCATGGACGG 5768 29 100.0 32 ............................. GTGCAGCTCATCGATGATCCCGCCGTGGACGT 5829 29 100.0 32 ............................. CGTGGGCACCCCGGAGGAAGGTGGAGGAGCAG 5890 29 75.9 0 .......T............A.CTC..TT | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 CTGGTCCCCGCGCGTGCGGGGATGGCCCC # Left flank : GATCCGGAGGCCACGCCGTACACCGTCCGGGCCAGGTGTCTCGCGTGCGACGACCTGTCTCCGGAGCCCGAGCCGTCGGAGTCCATCACGGCCCAACACGAGCGCGCGCAGCACTGGTGTACGCGCCACGCGGCCCGCGACCATGCGGACGGACGCCACGTCCGCTTCGCCGCGACGGTCACCTTGCGGTGGCGCGTGACGCCTGCTGAGGACATTGGGCCGGTGGCGTTGTGAGGGGTTGTGGGGGTGTAAGGGTGTGGGGGCGCCTGGTCGGCGAGTTGCGGGTGACCTGCTGTGGGTGGCTTGCGCTCGCTGGCCTTCGCTTCGCGATCGTCGGAACGCGTCGTATCGGCGGGGTTGGGCGATAGCCTGGTGGGCCTGCTTAGGGGCGGGGCGCCTTGGGTGAGATGTCGTGGCCATCGCTTTCGGGCGAAAGGTCGGAGTTCGCGGAAGTTGCAGAAATCCGGGGCTCGGCCTGACAAACCCGCAGGTCAATTGCT # Right flank : TGCGAGGCCCGATGGCTGCGCGTGGCTGAGATCAATCCAGCCCGCACACAGACACCACTCCCTTGATAGCTCAGGCAGGCAGAGCACCCGGTGGCGACTTCACCGGAAGGTCCCGGTTCGAGTCCGGGTAAGGGAACTGCTCGCTCTGGCTCTGTGCACCAGCACGGTGCATGACCGGGGCCGGTCGCGAGTGCACGACGGGAAGCGACATCAAGGAGGAAACAAGTGACTGCGATTGTGCCCCCGGTTCCCTTCGGTCTTGAGCACCTGGTCTCTCCGCCCCCGAACACTTCGGAAGCCCCGGTCATCACCTACAGCGACGCGCTTCAACTGAACGTCTCGGCTGCGGGGAATCCGTGGCACGCCGAGGCCGCGAACAAGCCGGAGACGCAGACGGAGACGAGCAACGGCGACGGCTCGTCCCCGGGCTCCGACAGCGGCACGGACCTCTACTGACCCATGCGGACAATCCTCATCCTGACCGGCCGTGACGACCTGAC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11547-11995 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000050.1 Streptomyces buecherae strain AC564_RSS886 NODE_52_length_28038_cov_62.875454, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================================================================== ================== 11547 27 96.3 32 ......................A.... GTCACCCGAGGCGAACGGCTTCCGGGCGGTGA 11606 27 92.6 31 .....A................A.... GCACCGGAACTGGGGGTGAGATAACCAGCGC CG [11622] 11667 27 96.3 31 ......................A.... GGCATCGGCACCTGCCGGGCCACCGTGCCGT CG [11683] 11728 27 100.0 32 ........................... CTGCGCCTTGTACTCGTCAGACCCACGCCGAA 11787 27 100.0 32 ........................... GGGCGAAGCGCCGTGGGCGCCGCCCCCTGCTT CG [11803] 11848 27 92.6 94 .......................T..T GCCTACGCGTACGTATCCGCCGTATCCATCGTCTGGTCCCCGCGCGGGGGGGGGGTGGTCCCTGGGACGAGCTGGCGCGCCGCGTCTGGGCGCC 11969 27 96.3 0 .......................T... | ========== ====== ====== ====== =========================== ============================================================================================== ================== 7 27 96.3 42 CTGGTCCCCGCGCGCGGGGATGGCCCC # Left flank : CGGCGGTCGCGCCAGGGCCGCGCTCCACCCGATCTCGGGCCGGGAGGACGTCGCCCACCACCTCCTCACCATCGCCACCCAGGCGCCCGGCCTGACGATGGTGGAGCGCACGGTCAACGGCCAGCCCGGCGTGGTCCTCCAACTGGACGGCGTGACGGTGTCGGTGATGTCCCTCGACGTCAGCGGCGACCGCATCACCCACATCTGGGGCATCCGCAACCCGGACAAGTTGCGACCGTGGACGGCAGGGTGAGTTGGTGGAGGTGCGCGCGCTGTACGGGGCGGGGGGCCTTCCGGGGGCGGCGTGAGTGAGGGCGGGTGAGCGGGTGGGGTGGCTGCGGGCGTACGTCGTGTGGGTGCGGGGCGGGCCCGATAGCCTGGGCGTACGGCTTTACGGGGTGGGTGCCGTGAGTGGTTTGTCGGGCTTGGGTGGTAGGTCGGAGTCTGCGGAAGTTGCAGAAAACCGGGGTCCGACGCGGTAAAGCCGCAGGTCAATTGCT # Right flank : CACCGAGCACCCCACCACCAAGCCCGTCGACCTCCGGTCCCCGCCCCCGCGGGGCCCCGCACAGCCAGCCCCTCACCCGTCCCCGAACGCCGCCCCCGTCACGTCCCCCACGAACTCCGCCCGGTGGTAGTCGTACGTCGTGATGCCGGACACCTTGATCAGGACGCAGTAGCGCTCCACCGTGGCCAGTCGCGCGGCCACCTGCGCGTACTCGCGGCGGAGGAAGTGGATCGCCGCCTGGTTCGCGACCGCGCTCTGGCCGCAGACCAGGATGATCGGGCGGCGGAACTCCTGCGGGGTGAACTTGGCGACGAGGGCGTACGACTGGTTGCCGGGGTCGAAGCGGTAGCGCTGGCCCGCGACCTCGATGGCTACCGAGTCGTCGCCCTCGGGACCGTACGGGTGGAAGGTCACGCCCGGGAGGTGAGCGGAGAGGTGGCCGGCCGTGCGGGCGTTGGCGCCGCCGAGGGGGCCGCCGACGCAGAACTCCGTGTGGTCGC # Questionable array : NO Score: 4.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.91, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGGGGATGGCCCC # Alternate repeat : CTGGTCCCCGCGCGCGGGGATGACCCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25370-24755 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000064.1 Streptomyces buecherae strain AC564_RSS886 NODE_68_length_67650_cov_59.230804, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 25369 29 100.0 32 ............................. CTGCGTCACCCCGCGTCACCCGCGTCACGCGT 25308 29 100.0 32 ............................. TGAGGGATGTGCGGGTCCGATTCGGGGAAGCG 25247 29 100.0 32 ............................. CCACATCAAGGCCGGCCGGGCGCGCAGCAGGC 25186 29 100.0 32 ............................. GGATGGTGTCCTCGTCGCGAACCCCTACAGCG 25125 29 100.0 32 ............................. GGTGCCGCTGGCAGCCGGGCTCGTCGCGTCCC 25064 29 100.0 72 ............................. ATGATCAACGACCGGCAGATGGTCGTGACCGGCTGGTCCCCGTTCTGGAGACCCAAAGCGACAAGCGGTCCG 24963 29 96.6 32 ................G............ TCGGCGCCTACGACCGCCGGATCGCGGAATGG 24902 27 93.1 33 ................--........... CGTTCGGATACCTCGCGGACGATGCGCGAGGTG 24842 29 100.0 32 ............................. GGGACCTCGACATAGCGAGAGCCGTCGTCCTT 24781 27 86.2 0 ................--......CC... | ========== ====== ====== ====== ============================= ======================================================================== ================== 10 29 97.6 37 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : GCTCAAGTCTGGTGCGTTCGATGGTCAGTCCGGTGCGGGCAGTCTCCTTGAGGGCGCGCAACCAGGTCATACGGCGAGAATACGGCGCTGATCACGGCAAACGTGTTGGGGCCCACGGGGCGCCTGGGCGGCGGGCCAGTCGGGACGACGCGCCCTGCGCGTACCGGGCCGGGGCGGGTCGGGCGGCGCCGGCCCCCCTGGGCAGTTCGGGCCGGGCTGGAGCGGGCGCATTGTCACGCGTCGCCTCCCGTGTGCGGCCTCCGTCCGCGCGGCGTCCGCGAGTCGCGGAGTACGCGAGTCGCGGAGTACGCGAACGGGAGGGCAACCGTGCGCGGTGCGGGCCGCGCGGTGCGGGGGTCGGCCGCTACGGTGGGGGCTGGCCGCCGGGCGACTTGGCGGTATGGGGCGTTGGAGGGAGGCGCGGGATGTGCGTTATGTCGCGATCGCAAGAAGTTGCAGAAAACCGGGTGTGCCCGCGCTAAACCCGCAGGTCAATTGCT # Right flank : ACAGGCAGGTGGCCCACCACAAGGCGGGCCACCCGCCCGAAGCGCGCCGCAGGCGATCACCCGTTGGGGGCCTCGCAACTGATGTCCATCAGCTTCATCGGCTTACTGGCGTCGAGCCCGACGTACGCGGTGAAGACCTGGGTGTCCTGCCCCTTGCCCCAGTGCGTTGTCACCCGCGCCCACCCCACACCCGCCGACTGGGCCGTGGTGACCGGTCCGATGTCGATGGCCTTGGGTGTGTTCTGGGCGCAGAGCAGCAGGTCGTAGTCCGGCGTCTGGGCGGCCTTCTCCTTGAGTTCCTCGGTCACCAGGTGCTCCCGCTCCCATGCGCTCGGGCCGTGGCTGCCGTAGAAGCCCTTGAGGAAGTGACGCACCTCCTTGGCGTCGTACTGGCGGCCGGTCGATTCGGAGCCGGAGCCCGACTGTCCGGCAGCCGCCACGGGCACGGCGGCGAGGCCGAGCCCGAGCCCGACGGCGGTCACGCAGGTGGCGGCGAGCAG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2360-2026 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000078.1 Streptomyces buecherae strain AC564_RSS886 NODE_82_length_68880_cov_62.207928, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2359 29 100.0 32 ............................. GAATCCGGCGTGATCCCGACGTACCGCAAGCG 2298 29 100.0 32 ............................. GGGAAGACGACGCTCAGCGGCGGCATCGCGGT 2237 29 100.0 32 ............................. CGAGGAATCTGAACGGGTTAAAAAACTGGGTT 2176 29 100.0 32 ............................. GCCTACCTGCTCAACCCCGCTGACCTGGAGGC 2115 29 96.6 32 ..............C.............. CAAGCCGGACGGAAGAATGTCATCGGTGCGTG 2054 29 82.8 0 T.............A......T...C.T. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : TGAGCCGTCGGAGTCCATCACGGGCCAGCATCACCGGGCCCAGCGCTGGTGTACGAGCCACGCGGCCCGTGACCACCCCGACGGCCGCCACGTTCGCTACGCGGCGACGGTCACCTTGCGGTGGCTGGTCACCCCGGCTGAGGACATCGGGCCGAGTGCTGGCCCGTAGGCGGGGTGAGCAGGCGGTGCGGGCTGTGGCGTTGGGGCGGTGGTGTGGGATGCCGGCGCCTGCGGGTGGGGGGCGCTGGGTGGGTGCGGGGGTGCGGGGGTGGCCGTGGGTGACGCTGGCTGTGCCGTCTTGTGAACGGGGTGGCACAGTTGGCGAGTTGGCGGTCCAGCGTTCTTGTCCTTGAGCCTCAGGGTGCGAACGCAGATAGGCTGTGAAGCCTGGCCAGCAAGGGGGCGTTGTGGGCGATCTGCCGAGTTTGAGCGATAGGTCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTGTCGCGCGGTAAACCCGCAGGTCAATTGCT # Right flank : TGGCGCTTGTCGGGGTCAGTGTGCCCGCCGCCCTGAACTCGGCGCGCTTCCCTGTCCGTCGCCATGACCAAGGCGGGCGCCCAACGCCGCCCCACAACCCTGCTTCGCGGCGAACCTTCCGAGCCGTCGCCGCACTTCAGAGGCGCACGGCGTCGTTCTGCCGGCGGTGAACACATGCCCGGTTGAGCTCGGCGGTCATTACCGTCCAGACGTATGACGACGATAACAACGCGCACGGTCGAGTATCCGGCCGATGGTCTGACGATGGTGGGGCGCCTTGCGATTCCGGCCGGCGTGGGTCGTCGGCCTGCGGTTCTGGTGGGGCCCGAGGGGACGGGGTTGAACGACTTTCAGCGCCGACGGGCGGACGCCTTGGCCGAACTGGGTTATGTGGCGCTGGCCTTCGACTTCAACGGCGGGCGTTGGTTCAGTGACCCCGAGGAGATGTTGGCCTATGTCATGCCTCTGCTTGCCGACCCCGACCGGATGCGGGGCATCGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65911-65272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000079.1 Streptomyces buecherae strain AC564_RSS886 NODE_83_length_146355_cov_63.195858, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65910 29 100.0 32 ............................. GTAGGCAATCCCGGGTGGCGGCGTGCCTCTCG 65849 29 100.0 32 ............................. CCCGAAACCCGCCCGTGGAGGCACTTCGTGAC 65788 29 93.1 32 ........T................C... TCGACCAGCGGGCCGAGGAGATCGAGAGGAAG 65727 29 100.0 32 ............................. CAGGCCGTCGAGCTCGACATCGACATCGCGGC 65666 29 96.6 32 .....................G....... TGCCACGGCTGCAAGGACGGCCCCAGCTACGC 65605 29 93.1 32 .....................G...C... CAGAACCGGTCGTCGTCGTACTCGACGTCCCA 65544 29 89.7 32 ........T............G...C... GAGAAGGAGGCCGCCCTCGCCGAGCGCGTCGA 65483 29 96.6 32 .....................G....... GTCGTACCCCTGTACACCCGGCTGGGCCCGCG 65422 29 96.6 32 .....................G....... GACGTGAAGCCGCTGTACCGGGTGGGCGGTGG 65361 29 93.1 32 ....................AG....... TGGGCGATCCGGTGCTGCCACACCGCGTTCTG 65300 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.3 32 CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : CCGCGACTGGCGCGCGGGCGCCATCCTGGGCGCCACGGCGGCCGGCCTGCTGCCCTGGTTCGCCTACCAGGACCGCACGATCTTCTCCTTCTACGCGGTCGTCTTCATCCCGTTCCTGTGCCTCGCGGTCGCCATGATGCTCGGCGCCATCGTCGGCCCCCACGCCGCCACCGAACGCCGCCGCACCGTCGGCGCGGTCGGCGCCGGCGCGCTGGTCCTGCTGATCGTGTGGAACTTCATCTACTTCTTCCCGATCTACACCGGCCAGGCCATCCCGCTGGAGGCGTGGCGGGATCGGATGTGGCTGGATACGTGGATCTAGCCGGGGTCGGCTGATGGGGGCCGCTGGCGGGGGCCGCCGCCGAGGCCCGCTGGCGCTGGGCGGGCGCGGGGGCGATGGGAGGACTATGCCGGCTTTTCTGGGATTGGCCGATAGGTCGCGATCGGCGAAAGTTGCAAGAAACCGGGCTGTCGCCGGATAAACCCGCAGGTCAATTGCT # Right flank : ATCGACGCTGGCCTCAACTATGGCGGAGCAGCAGCGACGACAGCCGTCGCCCCGACAGGGTGTCAGTGGGATGGTCTACCGTCCGACGCATGGCCACCGATGCGCTCCCGATCAAGCCCGGCGACGTCCGCACGCGCGAGGAGATCAAACCCGTGCTAGGCGGCAGCCTGTACGGCGGCATCGTCCCATCCGACGAGAAGGCCAATGTGCTGCTGTTCTCGGACGCCGAGGCCGGAGCCAAGTACGGCTACTACGACGGCTGGTTGCAGGAAGAAGACGAGCTCGGCCCCATCTTCGAGTACACCGGCGCCGGCGGCGGCGATCAGGTCTTCGAGGGTCAGCGGGGCCAAAAGAACGCCGCGATCCTCAACCACGCCGACAAGGGGCGCACGCTGCATCTCTTCGTCGCGGTGGGCACAGTGTCCGGCAGAAAGACCAAGCGACACCGCTACGTCGGGGCGTTCGAGCTCGACGCGGCCGAACCGTACGTGATGCGGCAA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : CTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 186883-187824 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000080.1 Streptomyces buecherae strain AC564_RSS886 NODE_84_length_307868_cov_63.225933, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 186883 29 100.0 32 ............................. GTTGAGATCGTCGAGCATGTTCGCGGTGAGGG 186944 29 96.6 32 ............................T GGGCCGTCGGCCGTGTTGGCGAGCTCGAACAG 187005 29 100.0 32 ............................. AAGAAGATCCCCGGGTCCTGGTACGTCGACCT 187066 29 96.6 32 ................G............ CAGGCCGTCAACGCAGACAAACTGGGCGGCTC 187127 29 100.0 32 ............................. TGCGTCCACAGGCCGCCCGCGTTGGTCATGAC 187188 29 100.0 38 ............................. CGGTCGATCGTCGCGCCGGTGCCGGTGCCGGTGATGAG 187255 29 96.6 32 ................G............ ACTGAGAGCCTCCCGAGTCGGCGGACCGTTAT 187316 29 100.0 32 ............................. AGCAGCGGGTGCGGGATGCCCGAGACCAGCCC 187377 29 100.0 32 ............................. CCCGCCCTGACGAAGACCGGGGTGTGGGCGGC 187438 29 100.0 32 ............................. GGTGGCGGCGATCTCGTCGGAGACGCTGTCCC 187499 27 93.1 32 ........--................... GGTTCTTCCCCGAGCCCGAGTAGCCGCGCTCG 187558 29 96.6 31 ............................T ACTGCGAGCCCTGGACCGAGCCGCCCAGCTC 187618 27 93.1 32 ........--................... GGCTTGCCCGAGGCTCTGCCGTCTCCGCGCGT 187677 29 96.6 32 .........................C... GAGTCCTCCGCTAGGCCAAAGACCTCACCTTG 187738 27 86.2 32 ..C.....--...............C... TCCTCCTCGGCGCCAACATGCACGACCTCGAC 187797 28 93.1 0 ..............T..........-... | ========== ====== ====== ====== ============================= ====================================== ================== 16 29 96.8 32 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : GCACGCGCTCGATACGTACGGACGACGCACTGAACACCGACAGCAACTTGCCGTCAACAGGCGCCGGAAGTCGGGCCAGCCGTTGGGCTGCTGCTTCAGCGGTCCGCATCATCTCGTCAGCCGTGTCGTAGTCGTCGCTCCGGGCGTACGAGGTGGCCGCTGACATCAGAAGGCCGCCCCAGACTCGGATGCCTTCGACGGTCTGTGCGTGGCTCCGCTCCACCTCGTCGCCGGCGTACACGGCCACATGGTTCACCGGGAACGGGCCTACCACGCCGGCGTCGCGCACTAGGTGCTGGGCCCAGCTCTCGACCCGCGTCGGCTCACATCACGATGGACATGGCACTACTCATCGAGGTCTGCATCACAGCGCTAGGCTGAACAGCCTTCCCGCTCGAGGGGCCGGCATGGGCAATTCATCGACTTTGGGCGTTAGGTCGCGATCAGTGGAAGTTGCAGAAAACCGGGCCCCCGCGAGATAAAGCCGCAGGTCGATTGCT # Right flank : CGGCGCTCGCGCCAGACCGGCGCCGGCAAGGCAGGCATATTCGACACGTACGCCGACAGCTTCGCGGCCATCTGGAAGTCCGCCGTTCCGCTCCGTCAGGAGGGTTAGCTTTGGCCCGTACCGAGTACTACGACGATCCGACCGCCCCCGCACCGAACAGCATGGTCGTGGCGGCCTCCGCCGTGGTAACCGACGATGAGGGGCGCATCCTGCTCCAGCGTCGTCGGGATAACGAGCTGTGGGCACTGCCCGGCGGGGGCATGGACATGAGCGACTCCCTGCCCGGGTGCGCGGTACGCGAGGTCAAGGAGGAAACCGGCCTTGACGTGGAGATCACCGGGTTGGTGGGCACGTACACCGACCCACGCCACGTCATCGCGTACACGGACGGCGAGGTACGGCGGCAATTCAATGTCTGTTTCACCGCGCGCGTGCTTGGCGGAACACTGACCATCTCCGACGAGTCAACAGAGTTGCGCTTCGTGGCTCCCGAAGCGGTA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 241-513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000084.1 Streptomyces buecherae strain AC564_RSS886 NODE_91_length_14371_cov_64.180367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 241 29 100.0 32 ............................. CGCTACCAGGGCCAGTACGGCCCCACAGAGTC 302 29 100.0 32 ............................. AGGTCCACCGAGGCGGGCTGGACCCGCTCCGG 363 29 100.0 32 ............................. ACGTCGTCCCAGTTCAATGGTTCCGGCGGTTG 424 29 100.0 32 ............................. CTCGACATCGACCACATGGTGCCCCTGGCCGA 485 29 96.6 0 ..........................G.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 CTCTGGTCCCCGCGTGCGGGGATGGCCCC # Left flank : AGGCGGGGGCGGGGAGCGGGAGGCGGAGTGAACTTCCGTACGCGGCCGGGGTGATGATGGTTGGCTAGCGGGTGCCGGTTCCGTGCGGACCATGGGGTGTGCTGGACGGCCGATAGCCTGAGCGAGGACCGAAGAACGCGAGGTTGGCGCGCGATATGGTGTCGGATGTACGAGATGTCGGGATCGCAGGAAGTTGCAAAAAACGAGGTGGGGTCCCGGTAACGTCGCAGGTCAATTGCTC # Right flank : CACTTCCAGCTCGACGGCTTTCCCCAGCTCGTCTTCTGTCCCCGGAGGGTGGCTGCTCGCCAGTCCCCGCGCGCCACTGCGACTTCCATCGGGCGCCGCGCCTCACATGGTCCTATCCCGATGCGCTCGCTGTCTGTCATGCCAGCCGTCGATGGCGGTGACGCGAGCCAACGCTGCTTGGTGTTCGTCCTCCGACACGACACCGTGCTCCACTTCGAGGCGTGCGGCCAGCTCGCGCAGTCGGTTCATGTCGTCCTGGTGAGCAGCGGCGGCAGCGATGTAGTCGGTCACCCCGCGCGCGCCGGGGCGTAGTTCAATCGATGCCACCGACTCTTCCGGCACGGTGATGGTGATCTTTCGAGCAGCCATACGTTGAGGATGCCATGTGATGTCGAGCTTGCAATCGGCGTAAGACATACACGTACCGGCGACACAGAGAGAGCTGATGCATCACAGCACGTGGAGGATGCGTCGGGCTCGGAAGCTCGCGGGTGAGGCGG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGGTCCCCGCGTGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.60,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 3921-4419 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000084.1 Streptomyces buecherae strain AC564_RSS886 NODE_91_length_14371_cov_64.180367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================================================================================================================== ================== 3921 27 66.7 142 ...C..GT...T.....A.TAC...G. TTACGGTCTGGCCGATAGCCTGGGGACCTGGCGGAGGGAGGCGCGGACGGTGAGTGATTCATTCCCTATGCCCTTGGTGCCGGAATCTCGGGAAGTTGCAGGAAACGGGGCGGGCTCCGGGTAACGCCGCAGGTCAATCGCT G [3926] 4091 27 100.0 32 ........................... TCGGGCGTTCTGCTCGCCACCATCTCGATCGG CG [4107] 4152 27 100.0 32 ........................... GGCACCTACTACGCGGTGGCCTACCTGGGCTG 4211 27 100.0 32 ........................... CGGCCGGCGGCGCGGCGCCCGCCCCGCCAGAG CG [4227] 4272 27 100.0 32 ........................... ACGACTTCGAGTGCAACCTGTTCGCTCTGGAG 4331 27 92.6 32 .....T.................T... TCGCGCATGTAGTCCTCGACCCACACCCCGGT GG [4350] 4392 26 85.2 0 ..................A....TG.- | C,A [4401,4413] Deletion [4418] ========== ====== ====== ====== =========================== ============================================================================================================================================== ================== 7 27 92.1 50 CTGGTCCCCGCGCGCGGGGATGGCCCC # Left flank : GGGTTTTGCCGCTCCAACCGATCCAGTCGTGATCACATTCGCTCAAGGTGTGCCACATGCCCAATTCCCCTTCTCCTGGCCTTACTTTACGGACCGGCTAGCCCCTCCCCGCGAGGGTCGCTGACGCCGTTGGTTGGTGGCTGGCGTTCCGTCGGTGCCGTTTGACTATCGCTCGTCGACCGTTACAGATCGACTTCTTTCCTTGTCCTTCCCCATTTCGACCGCCTACCGCACGGATGTCGCACATCCGGTTGTGAGTGTTGCCGACTGCCGCCGGAGGGCCCGACGTTGCGTGACCGGCCACTTCCGGAGTGTTCCCCGGCCGCCCTCCCGACTCTGCCGTCGAAGCGCCTGCCGGCCAACGCGGCTCGCGGGGCGGGCACTTCGCGCCTTTGCGCGCCGGGCGCGCCTTCGCCGAGGGTCGGGTTGCCGTGCCGGGGCGGCACACGCCCCCTCGCTTGGCCTCCTCGCCTGGAGGGATTGGCCGGCGCCGGCCTGGG # Right flank : CCCCCTGCCCTCCGTCCTCACGCCACCTCCCCGCCCCGGCCCACCACGAACGCCGGTGTCTTGCCCAGTGCCGCGCTCAGCGCGGTGGTGGTGCCGATCTCGTCGGCAAGGTCACCAGCGTTGGCCCAGCGGCGTTCGTGCTGGCAGTCGTGGGGGCACGGGGAGGTGCTGTGGTCGGTCACGTGGACGTCGTCGCCGTCGGTCCAGCCGCCGTCCACGATGATGACCAACTGCTCCGGCGCGTTGCCCGCAGCCGGGCGCTGGTCCAGGGTGAGGGCGCGGTGCACGGTCGGCAGCTCAAGGCCGAGGGCGTACGCCGCGCGCCCGGCCGCGGACATGATCCCCTCACCGGCCCGCAACACCACACCCGGGAGCTGCCACGGCGTCCCCGTACTCCGCACCTGGAGCACGCGCGGCCAACCGTACGACAGGTCGGCCGGAGCGTCCGGGGCGCGGGGCCGCCACACCAGTACGTTGACGCGTACCTCGCGCCGGCTCAT # Questionable array : NO Score: 3.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-1.87, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.30,-10.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [13-13] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28-237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000125.1 Streptomyces buecherae strain AC564_RSS886 NODE_165_length_171_cov_57.619884, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28 29 100.0 32 ............................. GTCCGGGCGACAGCTACGGGAAAGACAACCGT 89 29 100.0 32 ............................. CCGACCACGACCACTGAGGAGGCGTCACCATG 150 29 100.0 32 ............................. CGGTCATGGATCACGGCCGGCGCCGGGTCGAA 211 27 93.1 0 ........--................... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : GGGGCCCGGAGGGCGCCCCCAAGGGGTC # Right flank : GTCGCGCGGATCAGCACGTGGGGGTCGTGAGG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [6.7-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12849-11753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000123.1 Streptomyces buecherae strain AC564_RSS886 NODE_160_length_37529_cov_58.281780, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 12848 29 96.6 32 .C........................... GCGGTGACGCCCTCGCCATCGCCGTCGCGGGT 12787 29 100.0 32 ............................. AACCCGCCCCCACCGGCAGCGCACTCTGAGCC 12726 29 100.0 32 ............................. GCGCGACCCCACCAGGTGGTACCCCCTACCGG 12665 29 100.0 32 ............................. GCATCGGCCGGTGCCCGCTCTGCGAAGGCCGC 12604 29 100.0 32 ............................. CCGCGCTTGACCTGCGCGGTTGCGGGTGCGCG 12543 29 100.0 32 ............................. TGCGCCGCGATCCCGCGTGGGCCTCTACGACC 12482 29 100.0 32 ............................. GACCGGGGGCCCGGAGGGCGCCCCCAAGGGGT 12421 29 100.0 72 ............................. GTCCGGGCGACAGCTACGGGAAAGACAACCGTCTGGTCCCCGGTCATGGATCACGGCCGGCGCCGGGTCGAA 12320 27 93.1 32 ........--................... GTCGCGCGGATCAGCACGTGGGGGTCGTGAGG 12261 27 93.1 32 ........--................... GCCGTGCTCACGTCCCCGGCGGCGGTCCAGAC 12202 29 96.6 33 ............................G CCACCGCGCCGTCCACCTCCACGCTGACGACGT 12140 27 93.1 32 ........--................... GGCAAGTCGGTGTTCATCGACGTCGTCATGGG 12081 29 96.6 32 ....C........................ ATCCGGATGTCGCTCAAGAGCGAGAACCCCGA 12020 29 100.0 32 ............................. CGCGACAACCCGCCGGCGCGCGTACCGAGTTC 11959 27 93.1 32 ........--................... CGCGAGGTGACTTCCTCCAGGACGTGGTCCTG 11900 27 89.7 34 ........--...A............... CATCGAAATGACCTCCGCCTCATCCCCTATCTTC 11839 29 79.3 30 T.C.C........A........C..C... CGGAGCTACCCGCCCCCGCCCGGACCGAAC 11780 28 72.4 0 ....C....A.-.A...C....C.CC... | ========== ====== ====== ====== ============================= ======================================================================== ================== 18 29 94.6 34 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : GCCTGAACTGTCGGAGTCCATCACTGGTCAGCATCAGCGGGCTCAGCGTTGGTGTACGAGCCACGCGGCCCGCGACCATCCCGACGGCCGCCACTTGCGCTACACCGCTCACGTGACTTTGCGGTGGCTGGTCACCCCCGCTGAGGACATCGGGCCGAGTGCTGGGCCGTAGGCGGGGTGGAGAGACGGTCCGGGCTGTCACGTCGGGCGCTGTGGTGTTGGGTGCTGGCGCCTGCGGGTGGGGAGTGCGGTTGGCGGGTGGATGGGGGCCGTGGGTGACGCTGACTGTGCCGCCTTGCGAACGGGGGCGGCGTGGCTGGTGAGTTGGCGGTCCAGCATTCCTGTACGTCAGCGTCGCGTGTGCGAGCGCAGCTAGTCTGTGAAGCCTCGCCAGCAAGGGGGGCACTGTGGGCGATCTGCCGAGTTTGAGCGATAGGTCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTACCGCGCGATAAAGCCGCAGGTCAATTGCT # Right flank : ACCCAAACCCCGAGCAAGCCCCCCACGACCCCCACCCAAGTCTCAATCAAGCCCCGCTCGTGTCGCCCGCCCCGCGTTGTGTGACTCATAGGGCGGCAGCCACCCACCCGGTACCGTGGTCCGAATGACCACCTCGCGGGATCGAGCGGCACGCAGGACCCGGGGAGCCGGGCAGCGCGACGGCGGCGCCCGTGGGGCGCCGCGCACGCTGGCGGAAGAGTTGCGGGGGCGCCCCGACAGCGCGCTCGAACTGTTGCTGCGCGCCCGGCCTGACCTGCTCAATCCGGTGCCGAACGACCTCACCCAGCTCGCCACCAGGGCGGGCACCCGAGCGTCGGTCGTACGGGCCGTCGAGCGGTTGGACCGGTTCGCGCTCCAGGTCGCCGAGGCGCTGGCCGTGGCGCCCGACCCGTGCCCGTACGAGACGCTGCGCGACCTGCTGACCGGCGACCCGGACACGCCCCCGGAGCCGGGCCCCGGCGCGAACGCCGACCCGCACG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18235-17961 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000123.1 Streptomyces buecherae strain AC564_RSS886 NODE_160_length_37529_cov_58.281780, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18234 29 100.0 31 ............................. CCCAGACGCCGAGCGCGGCGCGCAGCTCAGC 18174 29 100.0 32 ............................. GCGGCCGAAGACGCCGTGCAGGACATGCCACT 18113 29 96.6 32 .........................C... GGTCGCCCCTCCCCGTCATATGCCGTGTGCAT 18052 29 89.7 32 ...............T.........C.T. TCGGCGAGGGCCCACGGCCGGACGGTGCGCAC 17991 29 89.7 0 ................G....GG...... | TC [17966] ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : GGCCCGGTACTCCTCGGCCGGCACGACCGCCTCACACCGACCGCCGTGCTCGATGACCACCTCGGCGAACCACGCGTCAGGACCGTCGGCCAGACACGAGACCCCACACAGCTCAGCCGGGGCGAACTGGCGGATCGTGTCGGCGAGTAGCGCCCTGACTCTTTTCTCGACCTGCGCTGTAAGCCCACGGTGTCCGGTGATTCCGAGACGCACGAGGACCCCTTCCTGTGAGACTAGAGATTCATGTTCCTAAGCCGCTCTCCGAAAGCGCGGACGGCTCTGAGAGGCGCGGGTTACGAGCGCGATGGTGGCCGTGCTGTGGCTGGTTACCCTCGCCGAGGGCGTCGAGCCGAGCGCTGGACCGCGAGCAGGGCGATAGCCTGGATGGCCTGACCGGTAGGGGATTTATGGGTGGCATGCCGAGCTTGGGCGGTAGGTCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTGCCGCGCGATAAAACCGCAGGTCAATCGCT # Right flank : GCCCACACCCGACCACACCCTGCCCCCTCACCTCCCCCGCCGCGCCCCCTCGGGCCAGACGACATCCACAGGAATCCCCATCTCCCGTGCCGCCACCACCACATCGGCCGTTCCCCCGCCCTTGCCGCTCGGGGGTGCGCCGTCCCACACCGCGACCAGCCGGTCAGCCCGCTCCAGCAGCACCGCGTTGGCGGCCTCGTAGGCAGCCCGGTTCGCCGTTTCGTGGGGCATGACGAGGGTCTCGTGAGCGGCCAGGCGCAACCTGTCGAAGGTGTCCGCGTAGGCGGGCTTGACCTTCGCTTCGCGGTAGTCCCGCGACGGGATGACGACGACCAGGCGCCCGCCCGCCTCCAACACGGCCTCGGCGAACAGCGAGTCCGCTCCGGCGGCGATGCAGGACACGCCCGTCAGCTCGTCGTCGCGATGTTGGGTGATGACATGTCGTAGGGCCTCGCGTACGAGGGCAGTGGTGGCGTCGGTCAGGTCGATGTGTCCGGTGA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13170-12297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000017.1 Streptomyces buecherae strain AC564_RSS886 NODE_18_length_28238_cov_55.700016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 13169 27 100.0 31 ........................... TGGTCGAGACCACGGCGATGCCGGACAACCA GT [13154] 13108 27 100.0 32 ........................... ATCTTTCGTCCGGCGCCGGGTTCATCGCTCTT GC [13099] 13047 27 100.0 31 ........................... GCCCGGTGCACGCTGCGCGTCACCGTGTGGC GG [13031] 12986 27 100.0 32 ........................... AGCTCGCGGTAGAACTCCACGCGGCGGCCGCC CG [12976] 12925 27 100.0 31 ........................... AGTCGGCGTCGACCGCCGAATCGCCGTTGAT 12866 27 100.0 32 ........................... AGGAGGGCGGCGGCGGCGCCACCGCCGATCAG GC [12857] 12805 27 100.0 32 ........................... AGGGTTCGGATGACGACCTGAATGCGGTAGTA 12746 27 100.0 32 ........................... GGGATTCGGACTACGGCCTCGTGGTCGGGGAT GT [12731] 12685 27 100.0 33 ........................... TCGGCGACACCGGTTTCTTGTCCGGCCGGCTTG GT [12670] 12623 27 96.3 32 ...A....................... GGTCCGCCCGCTGTCGCCCCGCTCCAGTTCGC CA [12611] 12562 27 100.0 32 ........................... GCACCGCCTGCCGCGTGCCCGTCCCCACCACC 12503 27 92.6 32 .......................C..G AACGCGCTCGTGTACGCCTTGACCGCCGCTTC GC [12494] 12442 27 92.6 32 .....................AA.... CAGGCGTCGCCCGCGAAGGTCGCCGAGCCGAA 12383 27 85.2 31 .C......T..A..........C.... GAGGCCGCCACGACGGCGGAAGCGGGCTCGC GT [12367] 12323 27 74.1 0 ...A.......A.......C.TAC.T. | ========== ====== ====== ====== =========================== ================================= ================== 15 27 96.1 32 CTGGTCCCCGCGCGCGGGGATGGTCCC # Left flank : GACGCCGTGGCCCCGCCCGAGAGCGGGAGCAGCTCATCGAGAGGGCCCGAGCACCAGGACCGCGCCGGCGGAGGAGGGCAGGAGACGGCTACTGGAGAGCGACGATGTGGGTTTGGGGGCTATCGCCACGGTGATGTCGCGATGGACGACGACCGTACGGGCCTCGGCCGTGTCGGCGTTGAGTACGCATCGGCGCGATGGGGCTCGCCGCGTTTCGGGCAGTCACCCACGCGCGCATGCTGTCGCGCGTCAACACGTTGAACGGTAGAGCGGCGTTGGTTCTCACCCACGAACCCGACTCTCGATCGGATCGACTCATCATCATGGTGAGCGTGGCACTGCTCATCGGGGAAGCTGCTGAAGCGCAACGCTAGGCTGAACATCCTTGCTCGCCGGAGGGATATGACATGGGCGATTCGTCGTGGTTGGGCGATAGGTCGCGATCGATGGAAGTTGCAGAAATCCGGGGTCTCGCGCGGTAAAGCCCCAGGTCAATTGCT # Right flank : CCAGCACCGACAGCCCCAACCACCCACCCGCCGGCGCGGCGCGCCCCCACCGAAGGCCAGCGAGCCGCCAGCGACGCGCCGCACCCCCGGGCACCCCGAGCCGTGTACGCGGGGGGCCACCTCAGCCCCGACGCCCCGCTGACACCCCACCGAGCCCCGCAACAAGACCGGCCCCGCCAATCGCCCAGCACCCCACCCAGACCGCCAATCCCCCCGCCCCACAACCCCGGCGCCCGCGCACGCCCCGGCGCGATCTTCCTCTACCACTGCTCGACCGGCATTACCTGGTCAGAAGAGATCCAAGTTTGTGAATCAATTCACACCTACCCCTTGGCCGGGCCCCGTTTTCCGTGTTGAGATGCGCGCACGACTTCCGGCTCGATGGCGCGCTTGGGGAGGGCAATGTGGCGGACACCGCCATGTCACGTTCTGGATCGTCGGATTCCGAAGGAGAGCCAGGAGGCGGGCTCCATGCCGGACTGTTGGACGACCCTCTGCAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 243-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000156.1 Streptomyces buecherae strain AC564_RSS886 NODE_253_length_171_cov_45.555557, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242 29 100.0 32 ............................. ATGATCAACGACCGGCAGATGGTCGTGACCGG 181 29 100.0 32 ............................. CGCATCATCCGCGCATCAGACGGGGAGTCCGT 120 29 96.6 32 .....................G....... CGTTCTGGAGACCCAAAGCGACAAGCGGTCCG 59 29 96.6 0 ................G............ | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Left flank : CGCTGGCAGCCGGGCTCGTCGCGTCC # Right flank : CTCGGCGCCTACGACCGCCGGATCGCGGAAT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [15.0-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15969-16302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000141.1 Streptomyces buecherae strain AC564_RSS886 NODE_194_length_55308_cov_58.817078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 15969 30 93.3 31 .............A...............T TACCCACCGTCGTAGACGCCACCAGCACCAT 16030 30 100.0 30 .............................. CGACCGCGGCCGGTTACTCCCCAGCGTCGG 16090 30 96.7 31 .............................G GCACGCATCAGGCGCGTGGCGAGCGTGGTCG 16151 30 96.7 31 .............................C GCGCGAGATCCCCGACCGTGCTGACACTCCC 16212 30 90.0 31 .....................GC......T GGAGGGGTGCGTGCGCTGCACCCCGCGCGGC 16273 30 86.7 0 .....A.....A.............C...T | ========== ====== ====== ====== ============================== =============================== ================== 6 30 93.9 31 CTGGTCCCCGCGCGTGCGGGGATGGACCCA # Left flank : CGCTATCACGAGTACGGCGGTGCCGAGACCCTCGTGGTCGAGCAGGCGCCGACCCCCACCCCGGCCCCGGCGAGATCCGCGTCCGGGTGGCGGTGGCCAGCGTCAACCCCGTCGACCGGAAGGTACGTTCCGGCGCGGTACGCGAGCTGCTCCCCGTGGACCTGCCCGCGAGCCCCGGGCGCGACGCCGTGGGCGTGGTGGACGAGATCGGCGCGGCCGTACGGGGCATGAGCGTCGGCGACCGCGTCTCCGGCCTCGGCGGCGTCACCGGCGCCACCACCGAACTGGCCGTCCTCTCCGCCTGGGCCCACGCCCCGGCCACCTCGAGGGCTGGGTGTCGTTGCGTGGCGGCTTCGCGCATGGGGGTGGGGATAGCCTGGGGAGTCTGGTGAGTGAGGGGGAGTGTTGTGGGTGTTCTGCGGAACTTGGGTGGTAGGTCGGAGTTCGTGGAAGTTGCAAAAAACCGGGGTGGCGCGCGGTAAAGGTGCAGGTCAGTTGCT # Right flank : TTCATCATTGGCAGGGCCAAGCTTGTCAGCGCCTGCTCCCCGTGCGGAGATAGTCATGCGAGGACCCGAGCCTGGCGTCTCGTATTCGCCCCCGTGCAGGCAGACCAGCGAACTACGAGCCCGAAACGAACGCCTTCGCCTCGGCGAGCGCCGCGTCCCACGGAAACGGACACTTCCGGCCCGGCTCGTTGGGAACGAACCCGCCGTCCCCGTACAACACGCTGACCCCTACCGCACGCAGCTCCGCGACGGAGCGTGCGAACTGGGGATGCTGGGCGTACGCCGAATTCACGCACGGCATCGTGATCAGCGGAATGCCCTTGCCGATGCCCTCGGCTACGACGCCCACCGGAAATGACGAGATCAACCCCAACGCCCAGGCGTTGATGCTGTTCATGGTGATCGGGGCGAACAGGATGGCATCGGCTCTGGGCCAGGCATCAGCCTCACCCGGGCGCTTGTACCGAGACCGTACGGGGTAGCCGGTCAGCTCTTCCAAC # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19733-20729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000141.1 Streptomyces buecherae strain AC564_RSS886 NODE_194_length_55308_cov_58.817078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 19733 30 100.0 31 .............................. GCCTCCACGCCCGTCGGCGCGCCGCCGTGGC 19794 30 100.0 31 .............................. GCGCCTCGTTGTCCTGGAGCAGGTCGATCGC 19855 30 96.7 31 .............................G CCCGGTGCACGCTCCGCGTCACCGTGTGGCA 19916 30 96.7 31 .............................T GGGCGGCGAGCGACGAGCGGTGCCCGTGTGG 19977 30 96.7 31 .............................G ATCACGGCATGGACGCGATGCGCTACATGGT 20038 30 93.3 31 ................G............G GCGCGACGGCCCCGCAGCAGGTTCCCGGCCA 20099 28 90.0 32 ................--...........T CGGGGAGAGGGTCGCGATCCTGATCCCACGCG 20159 30 93.3 31 ................G............G TCACGATCGGGGGCGGCGGCATCCTGCAAGT 20220 30 96.7 30 .............................A TCCACGTCGCCATTTCGGGCGCGCGGGCGG 20280 30 93.3 31 ......................C......G CCAAAGAGGGTCTGCGAATTCGGCGACAGCA 20341 28 90.0 31 ................--...........A GGAAGGGGCGGACGATCAACGACCGTCCGCC 20400 30 93.3 31 ................G............G CTGAACTGGCGCGCTGCCCCGACGTGCTGAT 20461 30 100.0 26 .............................. GCATCAACCAGACGATCTTCGATCTC 20517 30 86.7 31 ......T..C..........A........G TGATCCTGAGCAACACCGAGACGCTTGGCCG GGT [20524] 20581 28 80.0 31 ....GT..........--...T.......G TCGTCGCGACCACCTTGCCTTCGAGCCGCCC 20640 30 76.7 31 ..A.C.......TA.....C.....G...A ACTCCGCAGCATCATCCGAGACGGAGCCGAC 20701 29 83.3 0 ................-....TG..C.G.. | ========== ====== ====== ====== ============================== ================================ ================== 17 30 92.2 31 CTGGTCCCCGCGCGCGCGGGGATGGACCCC # Left flank : AGATGAACCTGGCCCCTGATCCGGCAGCCGAGCCGTACACCGTCCGCGCCACGTGCCTTACCTGCGCCGACCAGTCACCGCAACCCGAACCCTCGGAGTCCATCACCGGCCAATACCAGCGGGCTCAACGCTGGTGTACGAGCCACGCGGCCCGCGACCATCCCGACGGCCGCCATCTCCGCTATACCGCCCACGTCACCCTGCGGTGGCTGGTCACCCCCGCCGAGGACATCGGGCCCATCGCACCGTAGGCGAGTGGAGGCGGGGCGGGTGATGAGGCGTGCAGGCGCGCGACTTGGTGAACCGTCCATCGATGGCCACGCTCCAAGAGGCTGCTGTTGGCGTCCGGTTCACGTGCGGAGCGGCTTGCGGATACGCTGCGAACACCGTCTTGCCGGGAGGTTGAGGTGAGCATTATGTCGAACTTGGGTGATAGGTCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTGCCGCGCGATAAACCCGCAGGTCAATTGCT # Right flank : CCGCCGACGGTGGCGGCAGCAACAGGCACAGGAAGGCTGTCGATGGCCAGCCCGCGTGGGACGAGCCGACACACATGGCCGCTACCCTGCCCGCATGATTCGAGCGGTGGTCTTCGACGTCGGGGAATGCCTCGTCGATGAAACGCGGGAGTACGGCACCTGGGCCGACTGGATCGGCGTGCCTCGACACACCTTCGCGGCGACGTTCGGCGCGGTCATCGCCCAGGGCCGGGACTACCGGGAGACCTTCCAGGAGTTCCAGCCAGGCTTTGACCTCTACGCCGAGCGTGAGCGTCGCGCTCAGGCCGGCCAGCCGGAGCACTTCGGGGAAGAAGACCTCTACCCGGACGTACGGGCCACGCTGCGCCAACTCCGCGCCCACGGACTGTGGTTGGGCATCGCGGGAAATCAAACCGTGCGAGCGGGCAAGATCCTGCGCCAGCTTTTCACCGATGACGTGGATCTCATCGGCACTTCGGACGACTGGGGTGCTTCAAAGC # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 22080-22471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000141.1 Streptomyces buecherae strain AC564_RSS886 NODE_194_length_55308_cov_58.817078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22080 29 100.0 32 ............................. TGGGCCGGCGCACGCTCGACAAAGCCGAGGTC 22141 27 93.1 32 ........--................... CACTCCCCTCTGCGCGACGTCGCGCAGTCCCC 22200 29 100.0 32 ............................. ACACTGCGGCACGTCGACACCTGGCTGCCGGT 22261 29 96.6 32 ................G............ TCCTCCGCCAGGTCGTCCAGGCCGTCCTTGAG 22322 29 89.7 31 .....G..............AC....... GGCGCAACACCGGGCCCATCCGCTCGCCCAT T [22347] 22383 27 93.1 31 ........--................... CGAAGAAGGGCAGCCACCGCATCATCTCCGC A [22408] 22442 29 89.7 0 ................G..T.G....... | A [22461] ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.6 32 CTGGTCCCCGCGCGCGCGGGGATGGCCCC # Left flank : GTCCATGCCAGTCGCGAACCAGGTGACCGCGAGTTGATCGAGCGCACGGCACGCCGCTTCGCACGCCTCGTCCGGGCGACCTGCCGTCGGAGTCCATCACCGGTCAGCATCAGCAGCTCAACGCTGGTGCACTAGCCACGCGGCCCGCGACCATCATGGCCGCCACCTGCGCTACACCGCCCACATCACCTTGCGGTGGCTGGCCACTCCCGGTGAGGGCAACGGGCCCATCGCGCCGTAGGCGGGCGAAGGCGGGGAAGGTGAGGTGTCGTTCAGGCGCACGTCGTAGTGAACCGCCCATTGGTGGCGGGCAGTTGCGTGCTCCAAGAGGCTGGTGTTGGCGTCCGGCTCACGCGCGGAGCGGCCTGCGGATACGCTGCGAACACCGTCCTGCCGGGAGGTTGAGGTGAGCGTTATGCCGGACTCAGGCGATAGGTCGGAGTTCGTGGAAGTTGCAAAAAAACCGGGGCGCCGCGCGATAAACCCGCAGGTCAATTGCT # Right flank : CCGAGCCACCGCAAAGCGCTGTCCAAGCCATCGCCCCACACCACCCCCGCAACTACATCGTGGCCCGGTCCGAGGCGGCGTGCAGCGAACCAAGCAGGCTCAGCGCCTGAGCGCTGGGACTGGCGGGTTCGGCCTGGTAGATGACGAGTTGTTGGCCGGGGGCGTCGCGTACGTCGAAGGTCTGGTAGGTGAGGGTCAGGGCGCCGACATCGGGGTGGAGGAAGTGCTTGGCGTCCTGGGTCTTGCCGCGCACGGCGTGGGTGGTCCACAGGTGGATGAAGTCCGTGCTGTGCTCGGTGAGGGTGTGGACGAGTTCCCGCAGTCGCGGGTCATCCGGGTCGAGACCGGCCGCCTGGCGCAGGTGGGCCACGGTGGCCTGCGCCGTGCTGTTCCACCGCGAGTAGACCTGTCGTCCCGCCGGGTCGAGGAAGACCATGCGGGCCAGGTTGTCCGCCCACTCGAAGGGTGAGTGCAGGGCCTCGGCCAGGGTGTTGGTCGCC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 24942-25386 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000141.1 Streptomyces buecherae strain AC564_RSS886 NODE_194_length_55308_cov_58.817078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================== ================== 24942 26 84.6 33 TG.TC..................... CGGGTTGGTCAGGGGCGGGTGGCGGCGAAGTAG G [24950] 25002 26 100.0 32 .......................... CCGCACGTCATCTGGCGCCGCATCGGTACCCA CG [25018] 25063 26 100.0 32 .......................... CCCAGCGGCGGACTTCGGCGCCGGCTTCCGCA CG [25079] 25124 26 96.2 33 T......................... CATCTGCAACAGGGTCGACAGGAGTTCGGTCGG 25183 26 100.0 33 .......................... CCCGTGGACGTGGATTCGGCGCCCGTCGAGCAG 25242 26 100.0 33 .......................... CACGCCCCCACCCCCGCCGTCCTCACGCCCGAG CC [25251] 25303 25 92.3 34 ...........A.........-.... CCAGGCCGGTGAGCCCCTGACCGTCGCCGACGCC 25362 25 80.8 0 .............A..C..-G.C... | ========== ====== ====== ====== ========================== ================================== ================== 8 26 94.2 33 CTGGTCCCCGCGCGCGGGGATGGACC # Left flank : CCACAGGTCGACGTCAACGAAATCATCGTCCGCCCGGCCGCGAGTGCACAGTGAGTCTCAGTGGTGGTGTTCGTGTCGCCCGTGGGCGATGTCGACCGCGCTGATGCTGGTCTGCACGGACTCGCCCCGGCCCGCCTCGTGACACGCGACTTTCTGAGGGACGGGAGCCTTGGCGCTACGTCGTGGCGGGTCCAGCCTCCTCGCCTCGGTCGCCGGTTCGTACGCCGTCCAGGTTTGCGTGCTGTGCCTGGCCTGACGCATGTCGCGTCAGCGGGCGGCCGAGTGAACCGGGCACCGCCAGCAGGCAGTTGTGTGCCTCTGAGGGCGCGATAGGTGTCGGCAGTCGGGCTGCTTGTGGGGGTGACCTGCGGATAGGCTGCGGGGGCTGGCGCGTCAGGAGGTTGAGGTGAGCAATATGCCGGGCTTGGGTGATGGGCCGGAGTTCGCGGAAGTTGCAAAAAACCGGGGTGCCGCGCGATAAACCCGCAGGTCAATTGCTC # Right flank : CCCTCACCCACCCACCCCCTCCCGACACACATCCCGCACCTCGCCCAACGGCTGGAACCCGGCCGACGCGTACGTCGCCACCGCGCCGACGTTGGAAGTCGGGGTGCTGACCAGTGCGCTGGAGGAACCCAGCTCCCGCAAGGTGACCGCGGCGGCGAGGGTGATGGCCTTGCCGTAGCCGCGGCCTCGGTGTTCGTGGTGGACGCCCATCGGCTCCAGCACTCCGGGCTTGCCCGGGCCCGCCGACCAGACGGTCACCGTTGCCACCGCCTCGCCGTGGGCGTCGTGCGCGAGCAGGCAACGGGCGTCGGCGTACGGCAGGCCGGCGGCCATCGCGCGCCAGCGGTCGGGCGTGAACGTCGATCCGCCGAACGACGCCCGCTGTACGTCGGCCCGTTCCCGCGCCCGTTCCGGGCCGACCACCTCGATCCGTACGCCCGGGTCCTCCACCGGCTCCGTGAGGTCGCGGCGCAGTGGTGTCCACGGCTCGTCGGGGTGCC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48859-48525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMUH010000035.1 Streptomyces buecherae strain AC564_RSS886 NODE_37_length_56074_cov_61.389343, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48858 29 100.0 32 ............................. ATGGCGCCGCGCTCCTCCGCTGAGGCCATGTC 48797 29 100.0 32 ............................. TCGATTCGGTTCGTCGGAGCATTCCGAGCGCG 48736 29 100.0 32 ............................. ATCAGCTCGGCGTACGGGAGCGGCACGGCCGT 48675 29 100.0 32 ............................. AGACCGGGCAGCCAGAACCCGGTGACGCAGAT 48614 29 96.6 32 .........................T... ATGCCGCACCAGGCCGGCCGCCTGTACCTCAT 48553 29 86.2 0 ....C.........C......C..A.... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 CTGGTCCCCGCGCGTGCGGGGATGGCCCC # Left flank : CCCGCCGCGTGTACGCGCGGCTACGTACGCTGAGCTCATGGTTGAGAACACCGTGCCCGTACGGGAAGCCCGCGCGCGTCTGGCGGACTACATCAACCGGGCCGAGGAGGGCGTTCCGACCGTCCTCACGCGCGACGGCGTATCGGTGGCGGCCCTAGTCCCGATCTCGGACCTCGAAGCGCTGGAGGAACTGGAGGAAGCGGCCGACGTGTTGTTGGTGCATGAGGCGGAGGCGGTCCTGGCCGAGGGCGGGCCGACGGCGACGATGGCCGAACTGCTGGCGGACCTGTTCAGCGAGCGCGGTGCGGGCGCGGCGTGAGGTACGCGTTCCGGTTCGCCGCGCCAGCTCCACGGCACGTCGGGCGTCGCCGTGGGCCGAATAGCCTCCCCGCCCGAAAGGACCTTGCGTGAGCGATTTGGCGAGATTGGGCGATAGGTCGCGATCAGTGGAAGTTGCAGAAAACTGGGGTTCCGCGCGATAAAGCCGCAGGTCAATTGCT # Right flank : CGCACCCGACAGCGCCCCCGACCTACCGTCACCCCCCGGCGCGCTCCGCCACCCCGAACGCGATCCCGTCCAGAATGTCGTGCTCGCTCACGACCACCTCGCGCGCGCCCGCGCGTTCCATCAGGGCCAGCAGGACGAGCGCGCCCGCGCCGATGACGTCCACACGGCCCGGGTGCATGACCGGGATGGCGGCGCGTTCGGCGTGGGTGGAGTGGAGGAGGCGGTCGGTGATCTCGCGGACGCGGTCGAGTGGGATGACCGCGTGGTGGATGGCGGCCGAGTCGTACGCGGGCAGGTCGAGTGCGATGGCGGCGATCGTGGTGACCGAGCCGGCCAGGCCGACCAGGGTGTAGCCGCCGGCGGCGGGGCGGAGCGGGACCGTCTGCTCGACCGTGTCGAGGGCGGCCTCCACGTCGGCCCGTATCGCGGCGATCTGGGCTTCGGTCGGCGTGCCGGGTTCGGGGACCTGGCCGGTGGCGTCGGCGAGGTGGCGTTCGGTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCCCCGCGCGTGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //