Array 1 101302-102367 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDP01000013.1 Clostridium sp. AF37-7 AF37-7.Scaf13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 101302 28 100.0 33 ............................ CTGATTCCAAGTTGGAGGGTTGCCTCCATAGTT 101363 28 100.0 33 ............................ CCATCTCTTTGTCCTCGTCTGACAGATATAATG 101424 28 100.0 33 ............................ CTGCTCTGTTGCCTTGTCAGTGTTCCAGTCATT 101485 28 100.0 33 ............................ CGTAAAACAATCTGGGTCACTGGTACAAATTTA 101546 28 100.0 33 ............................ TTGTTGTTCAGATTTATTTCCAATATCTAATAA 101607 28 100.0 33 ............................ CAGCGTTTACCAAGGCAGCGCTATGGGAGCAAT 101668 28 100.0 33 ............................ CGTTGGAAATCGTTAGAATCCATGTAAACCAGC 101729 28 100.0 33 ............................ TATGCCTGTAACTTGCCGCGATAATGTTGTATA 101790 28 100.0 33 ............................ CGAACGCGTCATGCTATTCCAGACACGCTGTTG 101851 28 100.0 33 ............................ CGTATCCGGAGACTATACTATTAATGCTGGAGA 101912 28 100.0 33 ............................ TAAAATCATGTCGGGCGTGGCGTTTAATGAAAA 101973 28 100.0 33 ............................ TTCGTCCGCAATGGATTTTTTAACAAATGTTTC 102034 28 100.0 33 ............................ TAGGTATGAGCGGATTGTATTCTTCGGTACAGC 102095 28 100.0 33 ............................ AGCGTCCCTGTCGTATAAGACCCCGACGACCTG 102156 28 100.0 34 ............................ TTTTATTATCTGATGAAAATTACTGGATGGTAAT 102218 28 100.0 33 ............................ CCATATCTACATGATATGATACATATAAAGTTG 102279 28 100.0 33 ............................ CTATCAGTATCAGCAAATGCGAGCAAATTGAGG 102340 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 18 28 100.0 33 GTATTCCCCGCGCAAGCGGGGGTGATCC # Left flank : TCATCAGATGAGATTATTGAGTTGGCGGCGATCAGAATCATTAACCACAAAATAGCAGACCAATTGGAGATTCTAGTGAAAGCAGAAAAAGGTGTTCCAAAAGTAATTACTGAACTTACGGGGATTACAGAGGAGATTCTTGAGGAAAAGGGGATGGTTCTTTCTTCAGCGATAGAGAAGTTTTGTGAATTTATTGGACAAAGTACAATAGTGGGTCATAACATCGCATTTGATCGCAGCTTTTTAAAGGAAGCTTGTCGAAAGACCAATCGTATGAATCTAAAAAATCCGGCAAAAGATACATTAGATCTTGCGAGAAGACGAATCGATGATATTGATGATTATAAGCTGCATGCACTAGCAGACTATTTCCAGATAAAAGTTGAGGAGGAACATAGGGCATTAAGTGATTGCATCACAACATTTCAGGTGTTTGAGAAACTAAATGAAATTTAGAGATGGAGATCGGGAAAAGGTTGTAAATAAGGGATTTTTTTAGT # Right flank : CGAACATCCTCAAACAACGTTACGGGACATTTGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 49-1202 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDP01000017.1 Clostridium sp. AF37-7 AF37-7.Scaf17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49 28 100.0 33 ............................ CCGGCAGATGCTTATCCCAAGAGGAGAAGAGAA 110 28 100.0 33 ............................ TAGGGCGCTTGTTGTGTTTCACACCGCAAACGT 171 28 100.0 33 ............................ CTGTTGGGGTAAAGCTGGCAAGTAGAAGGGAGG 232 28 100.0 33 ............................ CGTCACACCGAACCAGCTTAACATTACTGACGG 293 28 89.3 0 .........................CGG - Deletion [321] 321 28 100.0 33 ............................ CCTCCGGCACTTTTGCCCCCTCAAATTTGACGG 382 28 100.0 33 ............................ CTATTGCATTTAAAATGTCAATAGATTCATGAT 443 28 100.0 33 ............................ TTGAGAAGCGCCCCGAAATCATCGGACTTAAGG 504 28 100.0 33 ............................ TTTCATCGGAGAAAAGAATTACATAGTAACCAC 565 28 100.0 33 ............................ TAATAATTCAGCTGAATTACTTATTGGATAACA 626 28 100.0 33 ............................ CCTTATCTTTAACCTGTCCTGATTCAATGGCTT 687 28 100.0 33 ............................ TCAAGGTATCCGGAGCAGTTTGACCTAGTGGGA 748 28 100.0 33 ............................ TCACATCATCGCGAGTTATAATCCGTAGCGCAT 809 28 100.0 33 ............................ CGGTCGCGGAGGATGTTGGTTGGAAACGGGTTG 870 28 100.0 33 ............................ TCTGGAGGAAGAGGCAGCAAAGAGGGCGCTGGA 931 28 100.0 33 ............................ TCATCTGGCCGAGATGGAAAAGTACAGCTGGAA 992 28 100.0 33 ............................ TTGTTGCTTTTACCATTGCATCCTCCTGTATCC 1053 28 100.0 33 ............................ TACCGGTACAATCAGCGGAACCGGAAGTCTGCC 1114 28 100.0 33 ............................ CGAAAAACCGGAATGGTTGACGATGGATCAGAT 1175 28 85.7 0 ............T...........T.TT | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.8 31 GTATTCCCCGCGCAAGCGGGGGTGATCC # Left flank : AAGCGGGGGTGATCCCTGAGTAACCGCTTTCTCCGCCGCCACCAACCTG # Right flank : TTCCTAAAATCTAAAGTTTGGGAAGATAAGAACAACCTTATGATTTCAACATATGAAGCCATAAGGTTGTTTTTTTCGTATAGAAAACTTCACTGCCGCATCTTGAAGGTCACCAGAATTTGTGGGAAATGATAGGTGGTTGTTTGCTCAGTTTTTTGGAATATAGATGATTTTGTCACAGGCGTAAAGTTCTTCTCCCTCTCTGTTTCGCATTTCATATCCGATATATTTACAATTCCCATCCAACTGACTATAATAAAGAATGTCCGTTTGCCTGCAAAGGCGCGGAACCATATCCATCTGCATCAGGGCGATATGACAGAAAAATGAATTTAAAAGAATGGAAGAAACAACAATGGATGTAATTGGAAAATTTGGAAATAGGGTGAGCAGCCAGGCGCTTAAGGATCCGGAAAAAGCGCGTCGGCTGCTTCTTGCGGGATACCGCCTGCAGGAAAAGAAGCTTCAGTTTTTGCCGGATCGGGGGCTGCCGTCGTCGG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //