Array 1 47894-47012 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOEK01000002.1 Escherichia coli strain MOD1-EC5334 MOD1-EC5334_2_length_304870_cov_33.0011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47893 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 47832 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 47771 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 47710 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 47649 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 47588 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 47527 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 47466 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 47405 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 47344 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 47284 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 47223 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 47162 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 47101 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 47040 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67343-65972 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOEK01000002.1 Escherichia coli strain MOD1-EC5334 MOD1-EC5334_2_length_304870_cov_33.0011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67342 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 67281 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 67220 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 67159 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 67098 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 67037 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 66976 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 66915 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 66854 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 66793 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 66732 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 66671 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 66610 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 66549 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 66488 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 66427 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 66366 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 66305 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 66244 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 66183 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 66122 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 66061 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 66000 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //