Array 1 193-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMFZ010000306.1 Vibrio cholerae strain Vc3021 NODE_324_length_237_cov_0.887500, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 192 28 100.0 32 ............................ GTTACACGTGGTCGCGATATGCGCCCGAGAAT 132 28 100.0 32 ............................ TTCAGCGCGACTCAACATTGCGAGTAAATCGG 72 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCAT # Right flank : ATATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32885-32558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMFZ010000007.1 Vibrio cholerae strain Vc3021 NODE_7_length_199464_cov_113.743203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32884 28 100.0 32 ............................ AATAAGGTTTAATCTCTCGATACTCTTCGGTT 32824 28 100.0 32 ............................ CCGCGAAGATGCGAAGCTTGAAGCGCGCTTGC 32764 28 100.0 32 ............................ ATCAGGCTGGCAACGCTGGCTTGGTAGTTCGC 32704 28 100.0 32 ............................ TTAATGAACTCAGCTTGTGCGCCTCTGTGCGT 32644 28 100.0 32 ............................ TTCAAATTGTCACCATTTTGAAGAAGCCATGA 32584 27 85.7 0 .............T......A.T-.... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTCACCGCCGCACAGGCAGCTGATAAT # Left flank : TTCTGAAATGACAGCGCTTGGATACCTAAACATATCGCAGTCAAAATCGGTTCCTGAACAATACAATTTGGCTGTTTTCCGGCGCAATCAAAAAATCGACCAAGCGACACCGAATGGACAAAGAATCAGAGCCGAACGTTTGGCTAAACGAGCTATGAATAGAGGCGATTCACCGATTCGGTTTACCCCAGAAGACCTCGTATTCGAACATTATCATTCTATACCGATAACAAGTACCCGTAGTGGCAAATCATTCAGGCTAAATTTGCAATATCAACGACTAGATACAGTTCCAGATGGACAATGGGCATTTTCAAGTTATGGGTTAGCAAATCAAGAGCTTGAAAGTAGTCCTGTTCCCGTAATTTGACCAATTTAATATTCATACTCGATAGACATCTGATTTGTAAACAAAAAAATTAACCATTAAAATAAAAGGTATTATTTTTCTTTACCGATTAACAGATTGATAAACATACACTATATTGAAATTGACCATT # Right flank : TCACAAATAGCCTTTTAAAGGCTATTTGATTTCAGCATTAATAAGGATTATAATCCTCATTAATGCTGAAAAAGTATTTGATAAAAAACGTACCACGTTCATTCGAGTTCAAGATCAGACACTGCTGAATAAGTAGATATTAGGAAGATTGTGATTAGTGTTAAAAATAGTGGGATCAGAACCTAAAACAGATCTCACTATTTAGTCGAACCGCTACCGATATTTTAAGGTAACAAGTCTCGAACATCACACCGGAGAACTTCAGCTATTTGATAGGCCTTTTCGAGTGTGATGTTCACTTCTCCCCTTTCGATACGACCAACATAACTGCGATCGATATCTGCAGATAGAGCAAGTTTGTCTTGAGAAATACCTTTGTCTTTACGCATCGAACGGACATTGTGTCCAAATTTTTTCGCTAAGTCTTTCATTTCCAATACACATTAAAAAGAAAGACTATCCGTTCTTGATGCATACATTACCACGGACTATAATCCGCA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCACAGGCAGCTGATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 17382-19689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMFZ010000020.1 Vibrio cholerae strain Vc3021 NODE_20_length_71786_cov_120.190841, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17382 28 100.0 32 ............................ TTTAGTGTTGAGCACTAGTAAACCCGTTTTCC 17442 28 100.0 32 ............................ GTCACAATGTGGCGGTATAATTCTTGATGAAG 17502 28 100.0 32 ............................ AATTGCTGCATTCACAACACACTACGGCACTT 17562 28 100.0 32 ............................ AATCCCGATGCCGAGTTTGAGTCTTATAAGCG 17622 28 100.0 32 ............................ ATTCTGGGGCTTTCTTTCGAGAGTGGTAGACA 17682 28 100.0 32 ............................ CCAGCCAGAATTAGGTGAAACACGGTTAAATT 17742 28 100.0 32 ............................ TAATCGGAGCAATCCTAACTGGCGCAGTCGCC 17802 28 100.0 32 ............................ ATGCCAACGCCCTTCATCGGCAGAGCGCAGCA 17862 28 100.0 32 ............................ ACGATTTGATTTCGTTAATGCTAATGTGCTTC 17922 28 100.0 32 ............................ TTAACGCTAAACGCAACGTTTCTTCTGAACCG 17982 28 100.0 32 ............................ CACCGCGCTTTTTGCCCCTTTTGTGGCTTCAA 18042 28 100.0 32 ............................ CGACGAAGCAAGCAACGCGATCACAGAGTTTG 18102 28 100.0 32 ............................ AATAAACACGCCAAACGATGCGCCGATAGCCT 18162 28 100.0 32 ............................ CATACACGATGGTTAAGTGGATGGCTCAAGGT 18222 28 100.0 33 ............................ GGGTCTAATCGCTTGCAGTGAACAACGTGCTCA 18283 28 100.0 32 ............................ GTACTCTAAAAGTTAATATTCGTCGGCGTTGC 18343 28 100.0 32 ............................ CGCAGGCAGCACCAGCCCTTACCAAACCAAAA 18403 28 100.0 32 ............................ CGCGCAGACGTACTTAATTTTTATCACCTCGA 18463 28 100.0 32 ............................ ATCCTCAGCCCACCAGTTGCGTTGCTGCTCAG 18523 28 100.0 32 ............................ ATTTGTATCTCCTATCGTTAAACTTCCAATAA 18583 28 100.0 32 ............................ CGACGTGGTGCTGACTGACGTTACGTTATCCA 18643 28 100.0 32 ............................ ATAAACGGAGCAGCTTTCTCGGCTAGAGCATC 18703 28 100.0 31 ............................ TTTGGGAAAAGCTCCCGCTTGGCTTTTTTAA 18762 28 100.0 32 ............................ TTAGTTCTGCTCTAACATGGCCTCGATGCCAG 18822 28 100.0 32 ............................ TGTCGGCTTGTCGGATTTGCACCGTCTAATTT 18882 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCGTTATTAG 18942 28 100.0 32 ............................ TCGCTGAGCGATCACAAGAAACCAAAAACGAA 19002 28 96.4 32 ...........T................ CAGAATCTTGCGGCTGTAAACATCAGCCCAGA 19062 28 96.4 32 ...........T................ CGCATCACCACAAGCTCTCTCTGTCTCTATAC 19122 28 96.4 32 ...........T................ TACCGCGTGACGCGTCACGCTAATTTTTGCGT 19182 28 96.4 32 ...........T................ ATCAGCAACAGCGCCGGGTATTCGCACTGCAC 19242 28 100.0 32 ............................ TGAATCAATCACCGCAGCAAGGGCGGCTTTAG 19302 28 96.4 32 ...........T................ GACATCCGAGAGTCTATTGCCGAGTGGCGCAC 19362 28 96.4 32 ...........T................ GTTTCTAAGGCTTGTCCTGCGCCCGACGTTGT 19422 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 19482 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 19542 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 19602 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 19662 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 39 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //