Array 1 1065461-1066467 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039509.1 Salmonella enterica subsp. enterica serovar Worthington strain 7102.58 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1065461 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 1065522 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 1065583 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 1065644 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 1065706 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 1065768 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 1065829 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 1065890 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 1065951 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 1066012 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 1066073 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 1066134 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 1066196 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 1066257 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 1066318 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 1066379 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 1066440 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1075202-1076942 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039509.1 Salmonella enterica subsp. enterica serovar Worthington strain 7102.58 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1075202 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 1075263 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 1075324 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 1075385 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 1075446 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 1075507 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 1075568 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 1075629 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 1075690 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 1075751 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 1075812 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 1075874 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 1075935 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 1075996 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 1076058 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 1076119 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 1076180 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 1076241 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 1076302 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 1076363 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 1076424 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 1076485 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 1076546 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 1076607 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 1076668 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 1076729 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 1076790 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 1076852 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1076913 29 96.6 0 A............................ | A [1076939] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //