Array 1 109680-107881 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWY01000006.1 Salmonella enterica subsp. enterica serovar Rissen strain BCW_2864 NODE_6_length_179696_cov_4.80207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109679 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 109618 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 109557 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 109496 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 109435 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 109374 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 109313 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 109252 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 109191 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 109130 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 109069 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 109008 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 108947 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 108886 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 108825 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 108764 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 108703 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 108642 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 108581 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 108520 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 108459 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 108398 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 108337 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 108276 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 108215 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 108154 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 108093 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 108032 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 107971 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 107910 29 93.1 0 A...........T................ | A [107883] ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127722-126291 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWY01000006.1 Salmonella enterica subsp. enterica serovar Rissen strain BCW_2864 NODE_6_length_179696_cov_4.80207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127721 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 127660 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 127599 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 127538 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 127477 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 127416 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 127355 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 127294 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 127233 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 127172 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 127111 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 127050 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 126989 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 126928 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 126867 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 126806 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 126745 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 126684 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 126623 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 126562 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 126501 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 126440 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 126379 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 126318 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //