Array 1 66076-65613 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBI010000022.1 Campylobacter canadensis strain L267 L267_contig00022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 66075 36 100.0 33 .................................... GACAACTTAATATTTTTTAGCAGCTGATCTACC 66006 36 97.2 36 ............A....................... CCATACCCCAATAATGACTCGTTGTGGTGATGTTCT 65934 36 97.2 36 ............A....................... ATCAGAAGGCTTCATTTCATATCTATTATAACTTTT 65862 36 97.2 36 ............A....................... TTTTTGTAGATGGTATCTACTCATAAATGCTTTTTT 65790 36 100.0 35 .................................... ATAAGCCTTGTTTTGCTTTAGCTATTTTTTTATTC 65719 36 100.0 35 .................................... TGCAGTCTGCCATTGGCATTCCGCACTCGTCTAAT 65648 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ==================================== ================== 7 36 98.4 35 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : TAAAAATAATTATAATATCTTTTTTATGAGTTATTTTACTTAACATTGTTAAAAATAATG # Right flank : CTTAGAATACTTTGGGATAAGATAAAAGATATTAAAAATCCTATGTCGCACTGTACTACTGAAAATATCAAATTTGATGTAAATAAAGAACTTCAAAGTTGCTTAGATGTGTATCAAAATTATATTATAAAAAATGATGTTTTAGCTAAGTAGTTTTAAGGCTTTTGCCCTAGCCTACTTAACTTTTTGTATTAAATAGTTATTATAAACTATATTATCTTTAAAACTCCCTAAATTTTATATGCTTAAAAATGCTTTGTTTTACACCGTTTTCATCTTTTAAAACCTCTCTTTTTGTGGTGGCATAAACGGGTTTTAATGATTTTGCTTTAGCATAATTTATAAGCTTAAAGCATAATCCAAAATCACCGCTAATAAGCAAAAAATCACCTTTTTTAGTATTTTTATCAATGTATTCATAAAAATCCTTTGCGTATTCATCTAAGCTATCAAGGCTGGGCGGAACATTTGAAAACCTAGTTTGTAAATCCTTTGGCAAG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : GTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 60-377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBI010000024.1 Campylobacter canadensis strain L267 L267_contig00024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 60 36 100.0 37 .................................... TTTTACCTGCCTCAACGGCGTATTGTGTGGCGATGAA 133 36 100.0 33 .................................... CCATAAGGCTTTCATATTAAAACTAACCTCATT 202 36 100.0 34 .................................... TTGTAATCAGGCTTAAATTCTTCATGGTATTGCT 272 36 100.0 35 .................................... CGCACGGCGTGTGTCCTTTATTATCCACTCCCCTT 343 35 91.7 0 ...............................-..GG | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 98.3 35 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : AAAATAATTATAATATCTTTTTTATGAGTTATTTTACTTAACATTGTTAAAAATAATGGG # Right flank : GTTCCTGTTACATTTGGGATATAATATTTTCTTAAAGCTATTTAAATGATGTTATTAAAAGAATTATTTATTTAAAGTTTTTAAAAGCTTAATATGCCTTCTATTAAAATATAAAAAGTAATAAATATGATAAAAAGTTATAAGCAAAATCACCACACTTATTTTTTAGTTTCTAATATTATTAGCACATTTATTAATTTTTATATTTATAAATAATTAAAAAATTAGGCAACTTACCTTAGATAAGAGTTTTTAACATTTTATTACTTTTATATATAGCTTTGAAAGTTAGTAACAAAAAACAAATACGAATAAGGATTAATATTGTAAAAAAATTTAATTTTTTTTATTAATACTGTGTCTTTATTAACCGTGGGGGGGGGTATAATGATATGAAATATAAAGAAAGGAGTAAAAGATGGATAAAGCAAATGCAAACCATAAAGCTAATCAAGCAAATGCAAACAAAGGTAGTGCTGGACAAAATAAAGCACATTCTC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 103665-104933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBI010000073.1 Campylobacter canadensis strain L267 L267_contig00073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 103665 37 100.0 35 ..................................... TTTATAGGATTAGGAATGCCACCACCAATAGCTTT 103737 37 100.0 35 ..................................... GATTTGCTAACTACAAGAGACTTATGTTCCTTGTT 103809 37 100.0 36 ..................................... TAAAGTCGCTGCAAAAATTAACAAGATTAAATCTTG 103882 37 100.0 36 ..................................... GTTGTGGTAATAGATAAACCACTTGAAGAAAGGATG 103955 37 100.0 37 ..................................... TTAAAAATATTTTTCCAAAAAGTTATGTAAGCACTTA 104029 37 100.0 36 ..................................... TACAAAAAAAGCTTACCAAAATTTTTAAAAGAAAAC 104102 37 100.0 35 ..................................... TCAAGCTCTAGCACACCACCAGCCACGATTTGCTG 104174 37 100.0 35 ..................................... AAAGATTGGGGTTTTGAAGACAGTCAGAATGCTCG 104246 37 100.0 35 ..................................... AATACTTTAAATGCTGATTTCTCTAATGAAGAATT 104318 37 100.0 37 ..................................... TCGCTTAATCTTGCCCTTAAAACCTTTTCATTACCCT 104392 37 100.0 36 ..................................... TCATATGTTAATAACGAATATTTAATTAACGTTGAT 104465 37 100.0 35 ..................................... GTAGTACGAATTAAACATCTTTTTCCAACTTCATA 104537 37 100.0 35 ..................................... CTAGCATTTAAAGATGCAGACAATTCGGTTTATCG 104609 37 100.0 35 ..................................... TTCAGTTCATTATCGTCATTATATCGCAAATTTTG 104681 37 100.0 35 ..................................... GAGATGAAGCTACTTGAAACTTCAATTTTAGAAGA 104753 37 100.0 35 ..................................... GTTTCGAGTGCTGAATCGGTGCCAACGATGCCAAT 104825 37 100.0 35 ..................................... CCATAGGCAATTGAATACAACTTCTTGTCATTAAA 104897 37 97.3 0 .............................C....... | ========== ====== ====== ====== ===================================== ===================================== ================== 18 37 99.8 36 CTTTCAAACCTAATTCTAGCAAAACATGGTTTGAAAC # Left flank : CCTTCTAGCTAGTCTTGTTCTTTTAAAACCTCTTCTTTGATGTCTTTTCTTGGTTCTATCTTTTTTTAAAAAATTTATAGAAGATGGTTCAAAGATATAATTCGTAGCAGTTTTATCTATAATCTTGCCATCTTTTGTATGAGCTAAAAACACCCCATTATTTTTCGCTCCCATATCTATACTAATGTGAGTTTTCATGATTTCTCCTAAATTTATGTTTTAATGGAATTTTATTTAGCAAAGATTAACTAATAAGATTTATCGGGGTGGCTAAGCCAGTTGCCCGATATTTTACCAACCTTGTGGTGATTTCAAACTCTTAAATATTTTGCTAGAATTAGGTTTGAGTTGATATATTAGGCTAAAATTCTTAACCATAAGCTTAAATTTTTCTTATTTTTCCACAAAACGGCTGTTTTTTGCCGAAATTTTCAAAGTGGAAAAATAAGCAAACTTTAAGTTAGCTCAAATCCTTACAAGCTAGACAAGTTTATCTAGCT # Right flank : ACAATTTCTTCTTATTTATCTTTTGCTTACTGCACTTCTTTAATTTCTCTAACCAAATTATTTATCTAAAATATATTGATTATTGTAAGTCTTAATTGTTAGTTTGGCAAAAAGCTATATTCTTTAGCAAGTAGTATTTTTACATTAAAGAACGGATTAAGCAGTGTGTTAAATAAATTAAAAACAATCTAAATTAGCTTAATTAAAATTAATACATTCGCTTTTATCTACTATTTTAGAAAAACCTATGTAATTAAGCTTTATGCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAACCTAATTCTAGCAAAACATGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 71244-70508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBI010000047.1 Campylobacter canadensis strain L267 L267_contig00047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 71243 36 100.0 37 .................................... TATGGTGTATCGTTTACAACGATACATACTCCATAAG 71170 36 100.0 35 .................................... CTCTTGTTTAAGACAACAAAAGCAAATGAACAAAT 71099 36 100.0 33 .................................... TCATAACCTAAACTATTAAAATAAAAATCAGAG 71030 36 100.0 33 .................................... AAAAAATATTTGGAATTCATTTTTTACATTTAC 70961 36 100.0 35 .................................... ACATTGTTCGCTTCGTCGTTCTCCAGCCTTGAAAA 70890 36 100.0 34 .................................... TGAAATCTTTTTTAAGACCGATATAGTGACTTGT 70820 36 100.0 32 .................................... TTATCTAACACTTTGCTGAAAAGTTCTTGTAA 70752 36 100.0 33 .................................... AACATTATTTCTTTTTTTATGAAATCTTTTTTT 70683 36 100.0 31 .................................... ATTTATATTTAAATCAGCTTTGAAAATATAA 70616 36 100.0 37 .................................... TTTGATAAACCTATACCTTTTATCACTTTGTCTACTT 70543 36 91.7 0 ..C......T...A...................... | ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 99.2 34 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : AAAAATAATTATAATATCTTTTTTATGAGTTATTTTACTTAACATTGTTAAAAATAATG # Right flank : ATTCGCCAAATTATTTTCAAAACTTTCATCAGCTTTTGTGCAAGAAAATTACTATTTATTAGATTAGTAAAAAGAAGTAGCAAAAATGATTAAGCTATCTAAATACGAAAACGCAAGTAAAAATGAGATTGCAAAAGTAATTGATAAATATTTTGCTAAACTTAAAGAATAAAAAAATCAAAAAAACACAAAAAGCTATAAAGCAATTACAAAAGTTTTTAATCAAAGCTTGAAAGCTAACAAAACTAAAAATTATAAGTGGCTAAAAGAATATTAAAAGTAATGAATTTATAGAAGCACTAAAAGAAGCTGAAGAATTAAAATAGCTTATTTGCGTGAAGAAGTGCAGTATTTAGAAGTTAAAGAATTTGTTAAGGAAAGTATGAAATGATAAAGCTAATTATTAAAGAACAATAGCATATAAAATAGCTTTAAAAAAATTAGGTAAATATAATAAAAAACCAGCATACAAAATCATTCATTGTTTAGCTAATGCTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //