Array 1 15832-14164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNST010000006.1 Lactobacillus delbrueckii subsp. bulgaricus strain CIRM BIA 860 CIRM_BIA860-i1-1_scf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================================================================================================================== ================== 15831 36 100.0 30 .................................... GTTGCCACCGCATTTTCTGGCTTTTTGTAG 15765 36 100.0 30 .................................... GTAAGTTTACTTTGGTTGATGCAGCTAATG 15699 36 100.0 30 .................................... AACTGACAGCAGTGTAGACCGAATTCGTGA 15633 36 100.0 30 .................................... GGCTTTTGCCTTGCACGACTTTTGCCTGCA 15567 36 100.0 30 .................................... CGTGTCGTCGTCAGATAATCTACATCCTGT 15501 36 100.0 30 .................................... CAGACTCATTGTCAAGACCTTACAGAAGTT 15435 36 100.0 30 .................................... ATTTGTCAAGGAGTACGGCTGGCGGATTGA 15369 36 100.0 30 .................................... ATACATACCGGCCCTTTGCGCCGTCAACAT 15303 36 100.0 30 .................................... GCTGCCATGGCGTCAATCGGCCGGGTGTTA 15237 36 100.0 30 .................................... CACTTGCCTCCCCTTTTTAAGCCAGCCCCT 15171 36 100.0 30 .................................... ATTTAATAACGCCTGTAATCTTGCCCTCTT 15105 36 100.0 30 .................................... AGGAAGCGCAGAAGTCTGTTGATCGTTCTA 15039 36 100.0 30 .................................... AAGCTGACGCCAGTGTCAAGCTTAATGAGA 14973 36 100.0 30 .................................... GTATATCTGGCGCTGATAGTCACAGTAGTC 14907 36 100.0 30 .................................... TGCCGGCAGTTGACCAAGCCTTATAAGGTA 14841 36 100.0 30 .................................... AATAACTGTGTGATTTTAATCGGAAGACTG 14775 36 100.0 30 .................................... CATATCCGTGCGCTCAGCCTCATGGACAGC 14709 36 100.0 30 .................................... CAAATTTAAGCCAAATGCTGATACCAGCAC 14643 36 100.0 30 .................................... CCGTTTTCCGTCACATGATACTCCGGCATC 14577 36 100.0 30 .................................... ATATGGATTCAATTTGAACACTCAAACATT 14511 36 100.0 31 .................................... ACAAATATCGCGGTTTTGATCGGTCGTCCGA 14444 36 97.2 30 ......................G............. CAACCGACATCACTGTTGCTCAAGGCGCAG 14378 36 97.2 143 ...................................G CTGCTTGGATGCGTGGATTGAAATAGTTTTATAGGGGTGCTTATTCAATGTTGTCAATTTTCCCGACGTATGTTGGGGTGGCCATCATAATGGCCTAATACTAAGACGACAATTCTGCTCATTCCACGTAGGTGGGGGTGATC 14199 36 75.0 0 ..........A..........C...G..GAC..AAG | ========== ====== ====== ====== ==================================== =============================================================================================================================================== ================== 24 36 98.7 35 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Left flank : CAGTGAATCTTTACTTCAAAAGTACATGACCAAATTAACTAGTTATGTAGTTGATGAGCTAAGCGCAGATGGCAGAAACAGAATCATTACCTTCTATCGCGATTTACTAAATGCTGTTCAAGACGAGTTGCTTATGGAAGATTTGCCGCTTGAAATAAGTTTTGACACAGACTTGAAGAAACTCTTCAAATTTGGTGGTCTACACTTTAACAAGACACTCACTCACGATCCATATGGTATAATCGAGACAGTACTTAGGATACATGACAGGTTAGATCTTAAGTCTACTGTTGTTTTTAGTAATGTAGCTCATTACTTAGATGTAGAACAGTTTATAGAAATATCTAAGCTGTGCTTAGAGCTAAAAAAGTCTATCATTTTTATCGAGTTTTGTAGCCATAAGGATCAGGTTGTATATGGTGATGCAAAATTCAGTTATATCGATGAGGATCTTGTTGATTGGTACTAGCCTTATATTAAAGCTGTGTTAAAAAATAACG # Right flank : TGCTTTTCGTGATTGAGAAGCACTTTTTCCTTTTGAACACAACAACTTAAAAAAACGTTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATACACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTAAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCTGCTATCGACCTGGGCCAAATCGCCCTGCGCGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGACCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAATTGCTTTAAACGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGGCTGGCTGAAGCCCAAATGTTAATCGGTGACCTGGGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //