Array 1 20650-21823 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVW01000066.1 Nodularia spumigena CCY9414 1099428179728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 20650 37 100.0 36 ..................................... CAAAACTTCTATAATGATTAGAGGTAAATGTAGCTT 20723 37 100.0 35 ..................................... ACCATCTTGGCTGATGCCTGTCTTGCACTGATGTA 20795 37 100.0 36 ..................................... ATATTTCTTAAGTAACTTTCCTTAATCTGGGGAAGC 20868 37 100.0 40 ..................................... GTGGGTAGTGCTGTGGCTGCTGCTAGTGCAATATTTGATT 20945 37 100.0 39 ..................................... CCTGGGTAAATTCCTTTAGCTGCATTCTCATTACTTGTG 21021 37 100.0 42 ..................................... TGCCAAGCTAATGGCAAACGGGTTGATAACTACATGAGGCTA 21100 37 100.0 39 ..................................... TTGTCTTTGATAGCGCGGTGCAAAACGGTTTGATTACTT 21176 37 100.0 40 ..................................... TTCCTCCCAGTGTGGATACGTTAGGGGTGCATGAGGAAAT 21253 37 100.0 38 ..................................... ATTTTAAGTAGTAACTTACCGCCATAATTGATGTACGC 21328 37 100.0 37 ..................................... AACACTATCTCTGGTTCAGAAGGAAAGTCACCAATGG 21402 37 100.0 48 ..................................... TATTTTTGGGAATTTTGGGGAGTTTTGGCGGCGAACTGTGGTGAACTG 21487 37 100.0 41 ..................................... AAGTATTCTGGTGTGTACAAATCCGGATCAAAATTAATGGG 21565 37 100.0 35 ..................................... AACGCGCCCCTTCTTTTTACCCTTTTCCTTACCAT 21637 37 100.0 35 ..................................... GTCACAGTCTTAGTTCTAGGATTATAACAACCCAT 21709 37 100.0 41 ..................................... CTTAAAGAACAAATAGGAGAACATACTTCTTCTATTCCTTT 21787 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 16 37 100.0 39 GTTTTTCATAACCATTTCCCCGCAAGGGGACGGAAAC # Left flank : TTAGATGAAAAGGCCTTGACACAACAGTTAGAAAATCGCTGGTTAAAGGTAATTAAAGTCAGTGAGGATAATTTGCGGATTTACCCGTTGGATAGTACAGCCAAGCAGCAAACGCGAGTCTATGGAAGTTCACCACCTTATGAACCGCCGGATTATTTAATTTTGTAAAGTTCAGTGTCTGAATTTTGCGGGAATACAAGTGCTGAAAGTGTTGTTTTTGCAAGCTTTCGGCACTATGTTACGGTATGTAAAGCAGTGGGAAATTTTGTCGCCGGGAGGTGGGAGGAATTAGATTGAGTAACGGTTTGTGAATAAGAGTAAATTTGTGGTTTTTGACTTGACTCGTTGGTGTTTTGCTGCTAAATTAAATATATCAGCAGATTATGCTGAATTTAATTCTTCAGTTATACTACGGTTAAGCTTTGATACTTATCGTTTTGCGTAGTCCGGCGCAACAGCACCTTGAAAACTAAATATGACAACGGTTTCCACTTCATGGG # Right flank : CTTTGAGTTAATAACGAGATTGTCAAACCGGATTGCTATATAATATTTATAGTGAGTAGGATACAAATAAAAATGTCAGAAAAAACTTTTGATATTGCTTACTTATCTGAAAATTTGCTTGATTTATTATCAGATATTCAAAATCATGTGGAAATTACGCTAACTCGTCAGGGCGTTCCTTGGGCAAAAGTTTTACCTCTTGAGCCAGAAGAGTCTACAGTTGAAAAAGCGGGTTTAAATCATGGCTCAATGGCGATGAATAGTGAAGAAGTCTTAGAACCAAGAGTTCCAGGGTTTTGGCAAGGAAAAGTTAAGATTTCTGAGGATTTTGATGACACTTCAGAAGAGGTGATTGCTGCTTTTTATGGTGAAGAGTAATGAGTTTTTTATTAGATACTCATATTCTGTTATGGTTTTTAGAAAATGATTCTAAGTTGTCAAATCAGGTACGCGAAGTAATTATTAATCCTAAAAATTGAATTTTTGTTAGTGCTATTAGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCATTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 20988-22541 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAVW01000058.1 Nodularia spumigena CCY9414 1099428179666, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 20988 36 100.0 38 .................................... CTTTCTACGCTGGCTTTTGTTCGCCCGCTTGTGCGAGA 21062 36 100.0 36 .................................... TTGCACTGCAATCTTGCAGTTTGCCATTAAGAGAGG 21134 36 100.0 35 .................................... TCAGAAGATCGGTTCTACAATCTAGAGGAAATTTC 21205 36 100.0 36 .................................... CATTGGTTTCATGTTCGGAGCAAAAATGGATTTTTA 21277 36 100.0 39 .................................... TAATTATAGCAGATGCGCGAATTCAACTTCGCGTAGATT 21352 36 100.0 35 .................................... CAGGCTATGTTCTTAGCGTTACTTATTGCCTTCAG 21423 36 100.0 38 .................................... CATAAAAAGGTCATCGTCATCGTATGCCATGAGATGGT 21497 36 100.0 29 .................................... GCAGTCGCACAGGTGCTTGCAGATGAGGG 21562 36 97.2 37 ........................A........... TGGCGGGTGCAATTCTGGCAGGCCTTCAGCTTGTCCA 21635 36 100.0 37 .................................... ACCAAATTCAAAGACACGTAGAAGGGACCGATCTTTC 21708 36 100.0 36 .................................... TTGATGTACGCATTATTCGTACAACTAAATCAAAAC 21780 36 100.0 39 .................................... TAAAGCCCACATCGTGAAGGTGGGTGAGGTAATGCCAAG 21855 36 100.0 37 .................................... ACGTTTTGTCCTCACCAGGGCAAAGGGTTCAATTAAA 21928 36 100.0 39 .................................... GAAGAACAGCCGATGTCCACCTGGGCGGCGGTTGGATTA 22003 36 100.0 31 .................................... TTATGGAAGATTTATATAATAGTCTCCTTGA 22070 36 100.0 35 .................................... GCGGCTGTTGTTCGCTCAACACCTCTTACACGGGC 22141 36 100.0 41 .................................... TCCGCTTTGAGTTTGGCTTTCGTCCCGACAGCCATTGTGAT 22218 36 100.0 33 .................................... TCAGAGAATTCAATTAAATGAGTGCCTAAAAGA 22287 36 100.0 37 .................................... CAAGAGCTCCTTTATAGTGAAGCGGCCAAGTTGGGGA 22360 36 100.0 32 .................................... TAGTCGCTCAAGTTGAGCGCCCGGCCTAACTC 22428 36 100.0 42 .................................... CCTGGTGGTAAACTTGCAACTAGTATTTTTGCTACTATTAAA 22506 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 22 36 99.9 36 GTTTCCATCCCCGTTAGGGGAAGAGGTTATGGAAAG # Left flank : TATCCAAACCAGCAAAATCCCAGCTTGAAGATAATAAGTAGCTTTTTCAATCATGTCTCCAAAAGTTTGACCAGGAGAAATAATTTCGATAACTAATTCTGGGATAACAGGACAAGCTTCATCTTTAAGCCAGTCAGCAGGAAGACGGTTATAGGAAATATATGTTAAATCAGGGACGGGTAGCCAATTTTCTTGATTTCTTGTTAATTTTATCCCCCATTCCACTACAACGCGACCTTTTTCTTGCGCCCATGTGGATAATAGGATAAATAATGCTCCTGTGGTTGCGCCATGAAAAAATTTAGGAGACATTTGCTCATTTTTATATTTCGGTACAGCTTCACCGTTAACAAACTCATAAGCAAGTTCACTTTCGGGAAGTGCAAGAAATTCTTCGAGAGTGAGTTTGGTTTTTAGTTGAGTCATGGTTAGTTTTGGTGGGTTCAATATTCCCGACTTCTATGATAACTGAAGTTCGGTTTAGACCCGGATTTCTCACT # Right flank : GAGTTTAGTTCTGGAAGCCTTGCTAGTCAAGGGTTTTAGCCCCCCCAATCGACACCAGTTTTTGCAGTGTCAATAACTCCCAAGAAATTCTCAATAACTCGTGAACTTTAGAGACTGGAAAGCTTACTGTGCAAGCAATCGACACCAGTCAACGAAATTATGCGGTTTTCAAGGTTCGGGGTAGTGGTGTCGATGAGTTTTAACTCACCTAATAAAATGTAAAATATATTGCCTGAAATTGTCAAGTTGTCTTCTGCAACTATTTCGGCGATAAAGACTAGATTACAGTCTGAACCTAGATAATTGACGTGAGGTACAAGCAGTCATAATTAAACGCAGATGGACGCAGATAAACGCGGATAGTTTTGTACCTTTTTTTTTTCTTCCTACCTTTGCGCCTTTGCGCCTTTGCGTGAACCTAATTCATATTTAAAATCAGCAACACCAGATAATTAACCTATATAATCACCGTTCTGCCTCGGACAGGGCAGAATAAAGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTTAGGGGAAGAGGTTATGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //