Array 1 38833-40054 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAALNH010000025.1 Clostridium perfringens strain CP-06 25, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
     38833	    36	  86.1	    29	A...C.TA..A.........................	CAGCTGAAGAAAAAGAAGCCATAAGGCTT  	A,A [38835,38845]
     38900	    36	 100.0	    30	....................................	TAGTTGAAGTTCTTATACCATCTACAACAT 	
     38966	    36	 100.0	    30	....................................	TAGTGAATACGAGGTATCATACCCAAGCTA 	
     39032	    36	 100.0	    30	....................................	TGAAGGACAGACTTCTAAATAGTCCGCTAT 	
     39098	    36	 100.0	    30	....................................	GCAGTATGCTAAGTGGTTTCCTATCAGTTG 	
     39164	    36	 100.0	    29	....................................	CAACTCCGTTTTTCTCTTCAAAACTAAAT  	
     39229	    36	 100.0	    30	....................................	AGAAAAACATAAGCTTAAACAACCCCTAGA 	
     39295	    36	 100.0	    29	....................................	TGATGGTAAGTGGCAAAATATAAAAGATG  	
     39360	    36	 100.0	    30	....................................	TATGGAATGAATCCTAATTTCAATCCTAAC 	
     39426	    36	 100.0	    29	....................................	CTTCTAAAGCTCCTAAATTACTGTTAGCC  	
     39491	    36	 100.0	    30	....................................	TTAGGAGGTTTTTTATATGGAAAACAATTT 	
     39557	    36	 100.0	    30	....................................	TTCATAATAAATAGTTGTTGGGTTGGCTTT 	
     39623	    36	 100.0	    30	....................................	TTAAGCTTAGGAGAAAGAATACAAGCTATT 	
     39689	    36	 100.0	    30	....................................	TTAGAAACTATAGCTGAATTTTGTGCAACT 	
     39755	    36	 100.0	    30	....................................	AACTTAACGCCTTTAAGCTCTTTTCCATCA 	
     39821	    36	 100.0	    30	....................................	TTCTCAATCCACATTTAACCACCTCCTTTA 	
     39887	    36	 100.0	    31	....................................	ACACCTCAAGGAGGAATTCTCTCTCCCCTCC	
     39954	    36	 100.0	    29	....................................	TAAAAATAATAGTCATGGACATAAAAATT  	
     40019	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        19	    36	  99.3	    30	GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT	                               	       

# Left flank :   AGTTTCTAAAAGCAGCAAGTCTATCCTTATTTTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGGTTATTAACTTTCAATTCTCTCATAATAACAGTAGCCCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTCTCATTTAACTTAATAAGCTCAACACCATCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTCTCATCATACCAAAAAACAATATGACGTACTTTTCCATCACTTAATGGCTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA
# Right flank :  TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAGTACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTCTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGTTTTATCTCTGGCAATTTTAATAATCTAAAATCTTTTTTACTACAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAACAGAATGATTTTTTCCA

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.77,0.41   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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