Array 1 1486680-1484431 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083396.1 Pasteurella canis strain HL1500 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1486679 28 100.0 32 ............................ TTTTTCATTCTCTGCCTCGGCTAAATTAAATA 1486619 28 100.0 32 ............................ TGATAGCTCGGTGATTGTTGAAATGAACTATA 1486559 28 100.0 32 ............................ GATAGGCTCAACGACACGTTTTACCGCTGCGA 1486499 28 100.0 32 ............................ TATCTCCCAATTGCTCGCCAAAAAACAGTGAC 1486439 28 100.0 32 ............................ TACCGCAAACCCCACTCATAAAGGCAAGTGCT 1486379 28 100.0 32 ............................ TGTCATTCTAAGCATAGTCATACCAAACTCAC 1486319 28 100.0 32 ............................ GTTCAAGCACGCTTTTTTAGCTTCTTCTTCAG 1486259 28 100.0 32 ............................ TTGAATAAAAACGTCATTATCCAAGCAAAAGA 1486199 28 100.0 32 ............................ AAAAACACATGTTGGTCGCACATCACGTCCAA 1486139 28 100.0 32 ............................ AGTCTTCGCTAATCCAAATTCCGCGATCGAAA 1486079 28 100.0 32 ............................ TTCTCGAATTTTTTCTCAAGATCTTCTATTGA 1486019 28 100.0 32 ............................ ATAATACTACCCACAACAAACTTGATAGCATA 1485959 28 100.0 33 ............................ ACAGTACGACAGTTATCAATAGTCGTACACAAT 1485898 28 100.0 32 ............................ TGTATTTAACACAACGAAAAACATTGATGTGC 1485838 28 100.0 32 ............................ TTTTTAGCGTTTTTTTAGCACTTTTTATGTAT 1485778 28 100.0 32 ............................ TTACTCCGTTTTTGCTTATCTCAGCACGATAT 1485718 28 100.0 32 ............................ GACGCTGATATTCTTATCTTGAAAAGAAAAAT 1485658 28 100.0 32 ............................ ATTTCTAATGTTTCCCACCCGCCAAGCTCTTT 1485598 28 100.0 32 ............................ AACAGGTGTCATTCGTGCATTATCAGATAACC 1485538 28 100.0 32 ............................ ATTCGTTTTTTGTGAGTGCTGTGGACGTATTT 1485478 28 100.0 32 ............................ ATCTAGCTCTACTGTGATGTGCGTTTGAATCG 1485418 28 100.0 32 ............................ ATTTCAACAAAATCATTTAAGTTTTGCGGAAT 1485358 28 100.0 32 ............................ AATCAACTGAATCTGACGGCAAACCGTGTTTG 1485298 28 100.0 32 ............................ TATATCTCCAATCTATGTGATCTCCTAATTGA 1485238 28 100.0 32 ............................ ACTGTTTTGTATTGGTGGTAATGAGATTGAGG 1485178 28 100.0 32 ............................ ATTCACTGCACTTAGCTGATGAGTCAATAAAT 1485118 28 100.0 32 ............................ GACTTTAGCCCGTCAACAGGTCCACTAATCTC 1485058 28 100.0 32 ............................ TTTTTTACATAAAAATTAAATAGAACGTCAAA 1484998 28 100.0 32 ............................ ATTACGCTTAAATAAGCTTGACCAGTAGAGCC 1484938 28 100.0 32 ............................ TTTTCCGTAGTGCAGATATGCGCCAACTGGTG 1484878 28 100.0 32 ............................ GATTGTCTATTACGAGTTGAAGAAAGGCGACA 1484818 28 100.0 32 ............................ AGTTCGTGAGTGCACTCTCGATGTTGTCGATA 1484758 28 100.0 32 ............................ GTTACATAATCCAATCACTGGTGTCTCAATTT 1484698 28 100.0 32 ............................ AATCCTGAGCATCTTGTTTGTTAGCAAACAAA 1484638 28 100.0 32 ............................ ATTTTTGATATATTCCGCTGCCTTATCAGTCC 1484578 28 100.0 32 ............................ TGTTGTCCAATAATCCCATAAAGCAAGGAAAC 1484518 28 100.0 32 ............................ TTAAACTCTCTTTAAATCAGCATTAAAGAGAG 1484458 28 82.1 0 ....................T.C.T.TC | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.5 32 GTTCAACATCGTATAGATGGCTTAGAAA # Left flank : CGGCTTTATCAACAATTATCACAAGTAGGATTGCAGGATTATGCGTTGATCAGTAGTGTAAATAAAACTCCTCCTGTAGCAGAATATCGTTGTTATAGTCGTGTGCATCGTAAAGGACAAAGTACGATTCGTCGCACAGAAAAGTTCCTGAAGAGTATTGACAAATGGCGTGAAGGGATTCGTGAAGAAATGCAACAACGCCAACAAAATACACCTTATTTTCCACATGTACATTTAAAAAGTGCGAGCACAAATCAGTGTTTTATCTTGGCAATAAGAGTCAATAAAACCTCTCAGCCTCATATTGCTCAATTCAGTAGTTATGGATTAAGTAATAAAGCAACGGTGCCACACTTTTAACCTAATTTATAACCCTTTTTTCTAACTGGCTAAATTAACAAATGAGATCAAAGGGTTATAAATATGCTGTAAAAAAGGGTTTTTCTTTCAGATGCTCTTTAACAATTTGAAGAATCAATAAATTTTTATTAATATTCTTA # Right flank : TGCTTAAATAAAGCTTATTATTTAAACATATTGAAAAAGTTAAATGTTATTTAATTTAGTTTAAACTGGATTTTAATATTTTTACACTTAGTTAAGGAGGATGTTGTGCGTAAGACACCTTATATTGCCTCTTCAGATTTAAAAACCATAATGCATTCTAAAAGAGCCAATATTTATTATTTAGAACACTGTCGAGTATTGTTAAATGGTGGACGAGTGGAATATGTGACTGATGAAGGTAAAGAGTCTTTATACTGGAATATCCCTATTGCTAATACTAGTTGCCTGCTATTGGGGAGTGGAACGTCTATTACACAAGCTGCAATGCGTGAACTATCAAAAGCAGGGGTAATGGTGGGGTTTTGTAGTGGCGGTGGTACGCCTTTATTCAATGGAACGGAAGCAGAAATTGGCTGTGAGTTTTTTAGTCCACAAAGTGAATATCGTCCTGTTATTTATTTACAACAATGGTGTCGTTTTTGGTTTGATGATGAAAAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1535618-1532529 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083396.1 Pasteurella canis strain HL1500 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1535617 28 100.0 32 ............................ GTGACAATGAAAATTGACAATACTGTAATTTT 1535557 28 100.0 32 ............................ AGAGCAGATGACTGCACTTTTGGTTGTCGCAA 1535497 28 100.0 32 ............................ TCTTTGTCTTTTTCAATCATACAAAAATCTTT 1535437 28 100.0 32 ............................ AATTTATCAAAAAGAATCTTTTGAGGAATATT 1535377 28 100.0 32 ............................ AGAACCTGATTGGGACAATGTCGATGACGCTA 1535317 28 100.0 33 ............................ CGTCGTCTTTAACGAACAGTAGCAGCGAAACGA 1535256 28 100.0 32 ............................ TGTGCCTCTTCTCTCGCTTTAGCTTCTGCTTC 1535196 28 100.0 32 ............................ GTTTTTTATCGCAAGTCCTGAAAAGCGGGAGT 1535136 28 100.0 32 ............................ GTTAACAAGTTCATGATAAATAGAAGGTTTTG 1535076 28 100.0 32 ............................ TCTCGAAGTCGATCTTATCCCATGTCATTGAA 1535016 28 100.0 32 ............................ TTGCCTTGCTCTATGTGTATATTATGTTCTAA 1534956 28 100.0 32 ............................ TCGTCAGCACTAATTAAATTTTCCATAATCTT 1534896 28 100.0 32 ............................ TCCTACATTTATGCAATTGGTAAAATCTGCGA 1534836 28 100.0 32 ............................ AATAAGGCTATTTGTGTTTGTATAAAGAGGTA 1534776 28 100.0 31 ............................ TCTCCAAAAGAAGCGGATAGCACTTTTCTAT 1534716 28 100.0 32 ............................ CATTGGATTTAGTTTAACTAATTGAAAGTTTT 1534656 28 100.0 32 ............................ TTAATTAATTTTATTAATGCATTAGTAAGATC 1534596 28 100.0 32 ............................ ACCAGCTGAACAGTTCATCGACCCAGAAACAT 1534536 28 100.0 32 ............................ AAAAGAACCAGGCAAAAAAACACCTGGTTCTT 1534476 28 100.0 32 ............................ AAAATCCGATAGCAACCCCAATTCTAAAAAAA 1534416 28 100.0 32 ............................ AAAATAGGCAAGTTTGGTAGCGATAAATGACC 1534356 28 100.0 32 ............................ TGTAGAGAAATCGTAATCAAGTGGATTTGTTG 1534296 28 100.0 32 ............................ AAGAATATATCCGTATGAACAACATTGAGCAT 1534236 28 100.0 32 ............................ AACGTTTTACATTCTCGATACACGTTTGCCGA 1534176 28 100.0 32 ............................ TAATAATCACAGAGCTTGGGTCGTGAATATCA 1534116 28 100.0 32 ............................ ACTAACGAATAGAGTTGCTTGCCCTGCGATAA 1534056 28 100.0 32 ............................ GAGACGATAAGATGAGCAAAAAAACATATAAC 1533996 28 100.0 32 ............................ ACATTAGGCACGTTTATTCTTTTGGTTATAAC 1533936 28 100.0 31 ............................ TCTGCAATTTCTCTTGACACAATTGCATAAT 1533876 28 100.0 32 ............................ GAGACGATAAGATGAGCAAAAAAACATATAAC 1533816 28 100.0 32 ............................ ACATTAGGCACGTTTATTCTTTTGGTTATAAC 1533756 28 100.0 31 ............................ TCTGCAATTTCTCTTGACACAATTGCATAAT 1533696 28 100.0 32 ............................ AAACATTGGTGCATCACGCGTGCCCTATTTTG 1533636 28 100.0 32 ............................ AAACGCAGAAAATAAGAATTGCAGCCATTAGA 1533576 28 100.0 32 ............................ CTTTTTTATCTTTGTTTACGTCGATTATACAC 1533516 28 100.0 32 ............................ TCGCTCTCATCTTGTGCTCGTGTCTATTGATA 1533456 28 100.0 32 ............................ AATATTCGTAGAGCATGGGCGTTAGGATCATG 1533396 28 100.0 31 ............................ TCTTATATCAAGTTTTCCACAGAGTTATTAA 1533336 28 100.0 32 ............................ AGCCGTTTTTATCGTCCTCGAAATTTTGAAGT 1533276 28 100.0 33 ............................ TGGTACATTTACGTCACACGACAAAAAATCTAA 1533215 28 100.0 32 ............................ GCTAAAAGAGTTTTTAGAAATAACTGGTGTTA 1533155 28 100.0 32 ............................ AGCTCAAGTTATTCTGAAATGGATAGAAGATT 1533095 28 100.0 32 ............................ AAATGTCACTAAATGGTCGCCCGCGACTGAAG 1533035 28 100.0 32 ............................ ACCGTGAGAGATGGAAACCGTCATTACTTCCA 1532975 28 100.0 32 ............................ AGTTGTGAATCACTTAAATGAATTTTGATAAC 1532915 28 100.0 32 ............................ AACAAAGACGTATTTAGCGTGTTTGCCTTTTT 1532855 28 100.0 32 ............................ TCGTTTAATGAGATTAGTTGTGCCTTTAATTA 1532795 28 100.0 32 ............................ CAGTAAATATACTACACGTTATGTACTTTTCA 1532735 28 100.0 32 ............................ ACATTTGAAAGTGTGACATCCGTCTGCACGCC 1532675 28 100.0 32 ............................ TGTAACCGTCAATGCTGAACTTGATTGATTGT 1532615 28 100.0 32 ............................ TGATCAATATACACTTGCAACAAATCAGGATT 1532555 27 82.1 0 ...........T.....T..-...A.G. | ========== ====== ====== ====== ============================ ================================= ================== 52 28 99.7 32 GCTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TACCTTACAGTGCGGACACTTATTTACATCGTATTGGGCGCACTGCTCGAGCGGGAAAAAAAGGGGTTGCTGTTTCGTTTATTGAAGCTCATGATTACAAATTGTTGGGCAAAGTTAAACGCTACACTGATGAACTATTAAAAGCGCGTACTATTGAAGGTCTAGAGCCTCGTACTAAAGCGCCTAAAGATGGTGAAGTGAAAACAGTCAGCAAAAAGCAAAAAGCGCGAATCAAAGCAAAACGAGAAGAAAAGCAAAAACAAATACAGCAGAAAAAAGTAAAAATACGGCATAAAGATAGCAAAAATATTGGTAAGCGCCGTAAACCCAGCGGACAAGTCAGCCAAACTGATTAATTTATTATACAGGTAACCCTTTTTTCTTAATGAGTTTTTTATCTAATAAGATCAAAGGGTTATTTTTATAGCTAAAAAAAGGGTTTTTGTATATAAAATGTGCAAAAGCTTGATAAATATTGAGGTCTGAATTAAACTGCCAAA # Right flank : CGGAAAATAAAGCATCGGATACTAATTGTTGTGTAAGCCAGTTTAGTCTGTTTTGCCTATTTTATCATTGTACATTTTGTTTTTAACTTGATAAGAAGGACAAAAAGACAACCGCACTTTTGTCGGTATGTAAAAGTGCGGTTGATTTTTCTTCTGTTTTATAGTGCGTTATTGGGTTGCTGGGGTACCGTATTTTTGTGCTAACTCGTTATTTAGTTGTGTAAACTCATCAGTGATTTTAAGTAGTACATCTCTTTTCACCAATAATGCTTGCCCACCAGCTTCTGAAGGATTTTGCTGTAGTTTTACATTATCTGTCATTAGTTCTGATGAAGTAACAAGTAAGATTTTTGCTTTTTCTTTTAGAGCACGAACTTCTGCACTATAAATAGCTAATGCATCTAATTCTTTTACAATACTATTAATTTCTTTTGAAAATGTAACTAATAGAGTTTCTAAGGCTTTTTTGTCACCTGATTGCAAAATTTCAACTAGTTGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //