Array 1 162542-161010 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBIR01000003.1 Pseudomonas japonica NBRC 103040 = DSM 22348 strain NBRC 103040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 162541 28 100.0 32 ............................ ATTTCGGCGGCCTGCAGCGCCTCTATGCCGAC 162481 28 100.0 32 ............................ TGGTAGAACGCTGCTAATGCGTTCTGGTGAGT 162421 28 100.0 32 ............................ TCGAGCGTGCGAACGCTGGCCGTCGCCTTGTC 162361 28 100.0 31 ............................ TTGCGGCGCGCCTGGCTGCCTCGCCTCGGGC 162302 28 100.0 32 ............................ TCGCGATCCGGGCGAGTGGTACCGGCCAGAAC 162242 28 100.0 32 ............................ ACGATCAGGTCAAGGCCGAAAGTCATCTTCTG 162182 28 100.0 32 ............................ GCCAAGGCCAAGGCATTCTCCGACATGTGGTC 162122 28 100.0 32 ............................ AGGAAGATGTCGGCCTCGGCCTCCATCACGTC 162062 28 100.0 32 ............................ AGAACGAGAAGGGCTGTAGGTTGTGTATTGCT 162002 28 100.0 32 ............................ AACTGAAGGGCGTCGGCCAGATGCTAGATATC 161942 28 100.0 32 ............................ TCCAAAGCGTGGTCGATGGTGCCGCTGATATG 161882 28 100.0 32 ............................ ACGCGGGGCACCGTGCAGGAAGTACACGCCAT 161822 28 100.0 32 ............................ GCTCAGGCGGTGCAGCGCGCCCGTACCCTGAG 161762 28 100.0 34 ............................ AAATATGTGGGGCAAGGTTGCACTATCGTTCGCC 161700 28 100.0 32 ............................ TTCGACACGAAGGCAGAAGCCCAGCGATGGGC 161640 28 100.0 32 ............................ CGCACGCACGGGGCACCTCTTGATCAGGTGTC 161580 28 100.0 32 ............................ AGTCGAACGAGACGGACTTGGGCTTCCTGACG 161520 28 100.0 32 ............................ CTCCCCCCCGTCAGCGGCCGGCCATTCACGTC 161460 28 100.0 32 ............................ GTAGGCGTGTAACCCAGTGACATAACCCCTCC 161400 28 100.0 32 ............................ TTCGATATTGATCAGCGAGGGCACCAGGTTCT 161340 28 100.0 32 ............................ TGCTGGGCGTTCGCGAAAGCCTGGCGCACCGG 161280 28 100.0 32 ............................ ATTCTGGAAATCATGCTGCGCAGCTATCAGCG 161220 28 100.0 32 ............................ AGAGGCAACTTGGCGCCGGCGTCGAGGCCTTG 161160 28 100.0 32 ............................ AACGCGCACCACGGCGCAATCCCGAAGTTCAA 161100 28 100.0 32 ............................ TCGTGCAGCTGCATTTCCCCGGTGGCGAGCAT 161040 28 89.3 0 .........................GGG | T,A,G [161012,161014,161016] ========== ====== ====== ====== ============================ ================================== ================== 26 28 99.6 32 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : CGAGACGGCCCTGAAAATCTTGAGCAACTGATCTGGTTGCTGGAAAAGGGTGAGCGCACAGCCATAGCTGAAAAGTTAAGAAAAAATCGAGAAAATTGCCTGAACTGAAGATTTTCGTCGGGCGCTCAAGAAAAAATCTGCGCTGCCAAGTAAATGAAAGGAAAAATTCATGCGCTCAGTAGGCTATGGGTTTCTGTGCGACAGACTGGGCTGTTGTGCAGGTGCATAGAAAGAGGGTTTTGGTGGCGGTGCTAACAGCTGGAAAAACTCACTGTCGGTTGTTTTCACCTACCAGGTGAGTCTTGCCTTCCAGTCCCCGTCTCAGTGACATGATCAATGACTTAAGCGCGCGCTCATCTCGTACGGTTGACCCTTTTTCTGAAGCAGTATGCTGGGGTTAGAGAAATCAATGACTTATGAAACTGACAGAAAAAAGGGTCTACTGCGTCTGAATTGTGCTTTTGCTTTTGGAATCAAAGGATTGTTAAGGTTTTGGTGTT # Right flank : CCACTTGGACTATGAGCCGGCAGGCTCTGGGCCCGCATTGCACCCCTTCGCGAGCAAGCTCGCTCCCACAATGGGCGGTGCCAGGCCCGAATTCCAGGCACAAAAAAGCCGACTAAAAAGTCGGCTTTTTCTGGATCTTGGTGCCCCGAGGGAGACTCGAACTCCCACTCCTTTCGAAAACGGATTTTGAATCCGCCGCGTCTACCAATTCCGCCATCAGGGCTTGTGGCGGCGCAGTATAAAGAGGCCCCTACCGTTGGTCAATCGGCTTTCATGGTCAATTTTTCCGCTTTCGGCTAAACTTCCCGGCCCTGTCGAACCCGTACCCCATTGCCATGCGCGTCGCCGATTTTTCCTTCGAACTCCCCGATTCCCTGATCGCCCGCCATCCCCTGGCCGAACGCCGGGCGAGCCGGCTGCTGGTCCTCGATGGCCCGAGCGGCGCACTGGCGCACCGGCATTTCGGCGATCTGCTGGACTACCTGCGCCCCGGCGACCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 163297-163088 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBIR01000003.1 Pseudomonas japonica NBRC 103040 = DSM 22348 strain NBRC 103040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 163296 28 100.0 33 ............................ AGCGAAACCGACAGGATGGGCGAGCGGGTCAAG 163235 28 100.0 32 ............................ TGACGTGGCCGGAGTGATTGATTGCGTACATC 163175 28 100.0 32 ............................ ACGCCGAGCTTGAACATTGCCGCGGCAATTCG 163115 28 96.4 0 .....................C...... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GTTCACTGCCGGGTAGGCAGCTCAGAAA # Left flank : GCAGAAACCCACCAGCACGCCGGCCCGGGCCAGCTCGCGCATCGCCGCTTGGGTGACCGAGGTGCCGGTGCCGAGGAGGATGGTCGTGGTGTTGGCGATCGGGATGTTCCAGTACAGCGACTGCTTGCCGGCGTCGGTGACGTACTCGACGCGACCGCCATTCACCAGGACGCGGCAGTGTTGCAGGTAATAGAGGTTGGCGCGCTTGGAGTGGAGGATGGTCTTGAGGTCGGAGGAATGAATGCCGTCCATGGTGGCAACCGGGTGTCCGTTCGGGTTGTTTGGCAGGTGGGGAGTTATAGCTGGGTTGATGGCTATGTGCTGGTATTTTTGTTGCTGATTGTTTGTGCCTGGGGGGAGGGTGTTGGGACCCTATTTTTGAGGAGGGTTGGTGAGGTTATATAAATCAATGGGTTACGAGGGTGGTGGGGAATAGGGTTTGAGAGGGTGGGGATGGGGTTTTGCTTTTTTTATCAGAGGGTTGGTAGGGTTTGGGGGTA # Right flank : GGTCGCGCCCGGAGCCCACTGCAGCGGTTTGCATTTAAGGTTTTTACGAGACGGCCCTGAAAATCTTGAGCAACTGATCTGGTTGCTGGAAAAGGGTGAGCGCACAGCCATAGCTGAAAAGTTAAGAAAAAATCGAGAAAATTGCCTGAACTGAAGATTTTCGTCGGGCGCTCAAGAAAAAATCTGCGCTGCCAAGTAAATGAAAGGAAAAATTCATGCGCTCAGTAGGCTATGGGTTTCTGTGCGACAGACTGGGCTGTTGTGCAGGTGCATAGAAAGAGGGTTTTGGTGGCGGTGCTAACAGCTGGAAAAACTCACTGTCGGTTGTTTTCACCTACCAGGTGAGTCTTGCCTTCCAGTCCCCGTCTCAGTGACATGATCAATGACTTAAGCGCGCGCTCATCTCGTACGGTTGACCCTTTTTCTGAAGCAGTATGCTGGGGTTAGAGAAATCAATGACTTATGAAACTGACAGAAAAAAGGGTCTACTGCGTCTGAAT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 168973-167942 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBIR01000003.1 Pseudomonas japonica NBRC 103040 = DSM 22348 strain NBRC 103040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 168972 28 96.4 32 ............G............... AACAGGCCGCTCTCGCGGATCATGTGGCCGAT 168912 28 96.4 32 ............G............... AGCACCGGCCCTTCGTCGAATTGCTGACCTGC 168852 28 96.4 32 ............G............... GGCAGGTGTTGGTCCGCTGTCTTCGCGTTCGT 168792 28 96.4 32 ............G............... GGAGAGAGCCAGGTGTCATCGTTGGCGCTGTC 168732 28 96.4 32 ............G............... ATCCATCCAGGTGGTTTTCTTGAGCATCGCGG 168672 28 100.0 32 ............................ AGCGCCCGTCAGGCGCAAGAAATGCGTCACCC 168612 28 100.0 32 ............................ GAACCTCCTGCAGCAGCTCGCCGGCAAGATCG 168552 28 100.0 32 ............................ TGATCAACTCGGCGCCAGGGGCGTTGGACACG 168492 28 100.0 32 ............................ TGGGGTTGGCTGACTCGACCCTTCCCAAGCAG 168432 28 100.0 32 ............................ AATGGAAGCGGGTCGGCAATGCTGGGCGCCTG 168372 28 100.0 32 ............................ AGGCCAACGAGTCGGACGCGAACCTGATCACG 168312 28 100.0 32 ............................ CATGAACATGATGTTGCCGGCCTGCTGGCCCA 168252 28 100.0 32 ............................ AATCTGCCGCCCAGCGGCTTGGGAGTCGGCAA 168192 28 100.0 32 ............................ GCCAAGCTGACCAGGCTGACCACGTTGATCGG 168132 28 96.4 32 ............G............... GAATCGGAAAGGCGGCTGCGCTGGCGGGCGGA 168072 28 96.4 32 ............G............... CAAGCCCAGCCATGCGCTGGGCCGAGGCCGTA 168012 28 100.0 14 ............................ ATTGCACGTAGATC Deletion [167971] 167970 28 75.0 0 C.G........A.C...T...G.G.... | C [167946] ========== ====== ====== ====== ============================ ================================ ================== 18 28 97.2 31 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GGCGCTGTCCGGGCTGCAGGCGCTCGACTGGCTGACCGGGATGCGCGATCACGTCGACGCCAGCGATAGCCTCGCCGTGCCAGAGGCGGTGAAGTACCGGACGGTGAGCCGGGTGCAGGTGGACAGCAATCCGGAGCGGGCTCGTCGACGGTTGATCAAGCGGCATGGCATCAGTGAGGAGGAAGCTCGGCAGCGGATTCCCGACAGTGCCGGGAAACGCTGCAGCCTGCCGTTCGCGACCTTGCGCAGTAACGGCGGCGGGGAGGTGTTTCGCCTGTTCGTTCGGCAGGGCTCGCTGCTGGATCAGGCGCAGGAAGGGACGTTCAGTGGATATGGGTTGAGCGGTACGGCTACGGTGCCCTGGTTCTGACCCTTTTTTCTGGAGTAATTTGAGGGTCTTTTGAAATCAATGGGTTACGGAGGGCTCTCAAAAGAGGGTTTGAAAGCGTTTTGGGGGTAGTTCTCCTTCAAAGACAACAGCTTGAAGGTGAGCTGCTCTT # Right flank : AGAGTTAGGCCAGGCTCCCCGCCTGGCCTAGCTTTTTTTCGCAAACCCCAACACCGGGTGATACCGCCACCCAAAGGTGCTCTGATAAACCTTCACCGTCGTAAACCGCTCAGCACAAACCGCCAGCGGCAACTCAAGTTCCTCAGCCAATTCCTCCAGCAACCCCATCACATCATGCCGCCCCCAGGGCGCGATCCCGGGCCCGAGCTCACGATCCAGATCAACCGGGTCGAGCAACTCGGAACACTCCAGATAAACCCGCGACTCATTGAACCGTCCCGGCTCATGAATCCGGTGCAGCACCAGTCTTTCCTGGTCCTCATCCGGCAGCAGCACCAGCTCTTCCTCGCGACCGGCATTCTCCCGAAACGGCTGGTGCTGCGGCAGCACCCAGGTCAATGCCGCCTGCGGAAACTGCCAGGCGCAGGCGGCATCCAGGTCGAGCGCTTCGCGACCGACTCGCCGGGCGAACTGCGGGACCGCGGCGCGCTCCTTCGGCA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //