Array 1 161936-163551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDTB010000002.1 Chromobacterium subtsugae strain ATCC 31532 Contig_2_324262bp, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 161936 29 100.0 32 ............................. AAGCTGAACCCCTTGTGCCTGCCCTCCTCCTT 161997 29 100.0 32 ............................. GGATTTAACCAGTTTCTTGGGGTCGGGGTCTG 162058 29 100.0 32 ............................. CGCGGCACGACGCTCGTTCAGCGTGCCGCAGA 162119 29 100.0 33 ............................. GACGTCTTAAACATGATGCTGGGATCTTTGGGC 162181 29 100.0 32 ............................. GTAGTGTCGTGGTTTGAGAGAAAGGCCTCCCA 162242 29 100.0 32 ............................. GTCCGCGACGACTAACTTTTTGCCGGGGGGGC 162303 29 100.0 32 ............................. GTCAGGGCGCACATCCAAGGGCAGTACTCGGC 162364 29 100.0 32 ............................. GCGTGATGATGAACGCCGACTCTCGCCAGAAT 162425 29 100.0 32 ............................. CGGATGCTGGGGCCGGTTACGCTGCTCTTGCC 162486 29 100.0 32 ............................. GCAACTGAGCCACGCCGACAACCGTGCCGCAC 162547 29 100.0 32 ............................. GTTCATGTACAAAGGGGTCGAATGTAGAGAGA 162608 29 100.0 32 ............................. TCCTCTGGATTTCAGGCGAATGGGATGCAGGT 162669 29 100.0 32 ............................. TTCCCGGATGGCCTGAAATGGATTTGCGGCTT 162730 29 96.6 32 .......T..................... TTACCTCCGGGCGCGATTTTTGTTTGTGACGA 162791 29 100.0 32 ............................. CAGTTCCTTCCGGTGAACCACGATGGCGATGT 162852 29 100.0 32 ............................. TTCCTTTCGCCTACGATCAGCGCGGAGGAGAT 162913 29 100.0 32 ............................. TAGCCGGAGTTCGGCACCGTCGGATCGGCCGT 162974 29 100.0 32 ............................. GAGCAATCAGCCATGCGCCTCTACCTCTCCGC 163035 29 100.0 32 ............................. GCGGGATCCGATGTACTGCTGTTCCAGGGCGA 163096 29 100.0 32 ............................. ATAAACCGCGCTTCTGATGATTGCGGTCAGGT 163157 29 100.0 32 ............................. GTGCCGATGCCGCGCATGCACTTCGCCATCAT 163218 29 96.6 32 ...................A......... CCGGCGATGTACTGGTTCTGCACGTCGAACCC 163279 29 100.0 32 ............................. GCCGTGGCGTCGCCGCCGGTTACCACCAGGGC 163340 29 100.0 32 ............................. GCGAGTGGTTTTCAGGCGAATGGAATGCAGGT 163401 29 100.0 32 ............................. TGGGGGTCCGGTGTCAGGCCGTAATAGGCGGC 163462 29 100.0 32 ............................. TGGCTGGTGGGGTTGGGGGGAAACAGGCCACT 163523 29 89.7 0 ..............C..........CT.. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCACGCGAGTGGGGATGAACCG # Left flank : GCGTGCGCGCGCTCCACCGCCTCGCGGATGTCCTTGACGCCGGCGAAAACGGCGGAGAGCGGGATGAACTCGGCATCGAAGCTGGCGGCGAGTATGCGCGCCAGCGTGGTTTTGCCGACGCCTGGCGGCCCCCACAGAATCATCGAATGCGGCTTGCCGGCCGCCACCGCCAGGCTCAGCGGCTTGCCCGGCCCGATCAGGTGCTGCTGGCCGATGACATCGTCCAGCCGCGCGGGGCGCAGCGCTTCGGCGAGCGGCTTCTGGGGTTCGGCGGCGAACAGGTCGGGCATGGCGGGCTTCGGGCGGGATATTGCGGAGCAACAGTATAACAGTTGGCGGCAGGCATGAAAAAAGCGCCAGCCAGGCGTTTTGGGCGTGCATGCTTGCGGGATGGCGGCAGGCTATGGATCTGGGCGATTTGAGCGAAGTATTGTTCCGGAAAAATCGGTAGAATTTGGGAGTGGTTTTTTATCTTTAAAAATCAGTGGATTGAAAATGGT # Right flank : GCCTGTATCGAATGCCGGCATGAAAAAAGCGCCCTTGGGGCGCTTTTCGGCATCACGAGCTGAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGTACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGTTTCAGTACCTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACTACGGTGGTCGGCAGTTCTACGGAGATGGCCTTGCCATCGTAGAAGGTGACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAACTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGAACCACCACGTCGAACTTGTCGTCCGCGCGGTATACGGCTTCGCTGCCGGCGCCGGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 167902-168845 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDTB010000002.1 Chromobacterium subtsugae strain ATCC 31532 Contig_2_324262bp, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 167902 29 100.0 32 ............................. TAGGAGGGCGGACATGACAGATCGCAGAATTG 167963 29 100.0 32 ............................. TTCTTGTACTGGATGTCGAACACCACCCCACG 168024 29 100.0 32 ............................. TCATCGATCAGTACCTCGAGGAACGATCGTTC 168085 29 100.0 32 ............................. GATGCGCATCCGCACCGATTCGATTTCACCTA 168146 29 100.0 32 ............................. CGATGGTCGAGTGGTTGGCTTTAACGGAACGC 168207 29 100.0 32 ............................. GAGGCCGTGCATTTCGGCAACGTGCTGGAGGG 168268 29 100.0 32 ............................. CTCATCGAGCGATTCGTTGGTACTGACGCAGC 168329 29 100.0 32 ............................. CGGGTGCCATTGAGCAGAAATTGCTGGGTCGG 168390 29 100.0 32 ............................. GCGATGATCCGGACGATGATGACGACGACGGC 168451 29 100.0 32 ............................. AGTTGCGAATCACCGCCAATTTCCTCCGTTTC 168512 29 100.0 32 ............................. AAAAAGGATTAATCAAAGCCGGCCCAGCTGGA 168573 29 96.6 32 ............................T TCTCGTCTCCAAAATGGTAATGATCCCAGTAC 168634 29 100.0 32 ............................. TCTAACAGAGCAGTTACGCCAACGAAGCCAAA 168695 29 100.0 32 ............................. CCGAATCCGCCCAACTGCTGGCCCATGTAGCT 168756 29 96.6 32 ............................C GCTGGGCATGGGTTGCCCCGAGATCCGACGCG 168817 29 89.7 0 ........................GG..A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : TTTTCCAACGCCTACGCCGACAATCTGCTGGCGCAGTGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCAGGCTGCCGCAGCTACAATGCGCCGACCGCGCCTTCCGCCCGGTTCACCTGCAACTGGCGCTGCAGGCGCTGACCGGCTTCGTCTGGCTGAACGCCGAGCGCACGGCGCAGCAAACCCGCTTCGCCGACGGCAGCCGCCTGAGCGCCAACTTCGGCGCGACGGCGGTGGGCGAGGGCGATCAGGCGCTGCCGCCGCAAAGCCTGAGGCTGGAGCTGGCTGGCCAGCCGCCGCGGCTGCTGCGGGTGGCGGATTGCGGCGGGGGCTGATGCGCGGCGATAATGCCGTTGTCGTTTTGCGGGCGCTGTGCCTGCGGTGACCTCCGCCGCGCTGGCCGCAATTTGGGTACGGAATTCTCGGTAGGATTGGGATGCGCTTTTTTGTTTTGAAAAATCAGTGAGTTGAATTTGGT # Right flank : ACGGCTTGCAAACGTGATGTGCGGCTTGTTTTTCTGGATGGAATGTCTCGGCTTGTGCCTGCCTGGCAAAATGCCGATAATGATTGAGCAAATTGCCTGATTGGAGATTGCCATGCCCGCACGCGCCGCATTCCGGCCCGACCCCGTTCTCATCCGCCGCGCCACGGTCAGGGAGGGAGAGCGCCGCTCCCGCCAGTCCGACTTGCTGGGCGCGCCGGTGAGCAGCGATTACGACATCGTGAAAGAGGTAGCCAAGGGCTTGGATCCCGGCGTGATCACTCGCCTGACCGATGAGGGGCTGACCCGGCGCGAGCTGGAGTTCGTCATTCCGCCGCGTACGCTGACCCACCGCATCAAAAACGGCGAACGCCTGAGCACCGACGAATCCGAACGCAGCGTGCGGCTGGTCAACCTGCTGCTGCAGGCCGAGCAGCTGCTGGGCGGCAAGGAGGCGGCAACCGCCTGGCTGCGCCAGCCATTGCGCCGTTTCGATGGCCGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 178608-181747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDTB010000002.1 Chromobacterium subtsugae strain ATCC 31532 Contig_2_324262bp, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 178608 29 100.0 32 ............................. ATGGCGGCGCAGCGAGCGCGTTCGCGCCGGCG 178669 29 100.0 32 ............................. TCACGACAAAATAGGAAAAAATAATATGCCTA 178730 29 100.0 32 ............................. GCTTACCTTAAATTCTATCGTTTTGGTCCTAT 178791 29 100.0 32 ............................. TGACTACCGAAAATGCGGCGTTTACCGCTGTC 178852 29 100.0 32 ............................. CCGGCAGTCTTTGCTAATTCGCAGCGGGAACG 178913 29 100.0 32 ............................. CTCAGCGAGGTCAACGCACAACTCGCGCTATT 178974 29 100.0 32 ............................. TGGGAAAACAACGTTACCCGCTTCTTCCGCTT 179035 29 100.0 32 ............................. CCCTAGCTAGCCAGAATGGCGCAGGCGCTTTC 179096 29 100.0 32 ............................. GAAATTCCGCGACAGGGCTTCAGATACAATAC 179157 29 100.0 32 ............................. GTTGAGCCGAACGTGCAATATTTTGCAGTTTT 179218 29 96.6 32 ............................T CGAACCGCACGGCTACCAGATGCTAATCATCC 179279 29 100.0 32 ............................. TCCTGGCGCATTTCCAGCGCGGCGAACAGTGG 179340 29 100.0 32 ............................. GAGATTGAGATGTTTGAAGTCACTCTGAAGCA 179401 29 100.0 32 ............................. GCGATTTGCTCTGGAGCGCGCCGAACTCAATG 179462 29 100.0 32 ............................. GGCGCTCCAGGGTGGGGCCGCCCCGTCGTAGA 179523 29 100.0 32 ............................. GCAGCCGACAAACTGTCCAAACTGGACAGTAG 179584 29 100.0 32 ............................. GTCCGCGATTACGCACGACTACAGGCGGCCTA 179645 29 100.0 32 ............................. GCGGAGCGTTGGGCGTCGAATTTTTTCGTTCT 179706 29 100.0 32 ............................. TCAGAGTCAGGAGGCCCGGCTTGCCCGACTCG 179767 29 100.0 32 ............................. CCCCACGTAGTCGCGCCGGCGGGCGCGCTGGA 179828 29 100.0 32 ............................. ATGTGGTTTGGCAATATGATAGCGTGATCACA 179889 29 100.0 32 ............................. ACTTTTTTCAACTTTTAGGTGACTACGTATTT 179950 29 100.0 32 ............................. TCCGACCTCGCCCGGCTACAGCGTGCGTTTCC 180011 29 100.0 32 ............................. CAAGAAGTAGCGCCATGGCCAAGAACTGGATC 180072 29 100.0 32 ............................. CTAAGGAAAACCGGCCGGCTATCTCTGTTATC 180133 29 100.0 32 ............................. TACCAGCGCACCCTATGCTTCTTCACTCTGCG 180194 29 100.0 32 ............................. ATGCGGTGGCCACCGTGAATGCGGTTGTAACC 180255 29 96.6 32 ...........A................. TCATTTCTCGCCCTCGATATTAGCGCTTCCTT 180316 29 100.0 32 ............................. GACCACGCCTCCTGCTGCTTCTCGCTTCGCGT 180377 29 100.0 32 ............................. ACGAAACCGAATCGCGCGTCAGAGCCGTCTTC 180438 29 100.0 33 ............................. GAGCTGAAGAATGGAATTCCCGACGCAACCTAA 180500 29 100.0 32 ............................. GGCGCAGATCCTCGCCCGGTCCACCACGCAAG 180561 29 100.0 32 ............................. ATGGGCATCGGTTACGAGGCCGTCGAGCTGCC 180622 29 100.0 32 ............................. CCGCCTATCAGGACGCGGACACCCAGATGAAT 180683 29 100.0 32 ............................. TTGGGTACCAATCTAGCGCGTCCAATTCCGTG 180744 29 100.0 32 ............................. TGGTCCGATTCTGCCGACCGTCGACACCAACA 180805 29 100.0 32 ............................. GCATGGCGACCTTGGTTCGAGGCGCGCCCGGA 180866 29 100.0 32 ............................. TGCTCATCGATATCCTCCAGCAACCCGGCATG 180927 28 96.6 32 ........-.................... TCATCGATGCTGATACGGAGCTGAAACGCAAT 180987 29 100.0 32 ............................. TCGCGCCTATAACCGTGCCGAGGATCATTGCG 181048 29 100.0 32 ............................. GCGGCCTATGAGGAGTTCTAGCCCCCCCGCCT 181109 29 100.0 32 ............................. CCGATTTTGTCCTGACTGGCCCGGATAACCTT 181170 29 100.0 32 ............................. TTCGGTGTAGGCAGCCTGCAGCTGCTCACGCA 181231 29 100.0 32 ............................. TTTTGTCCATGAGAATGCATGAATATCTCCGA 181292 29 100.0 32 ............................. TCGAGTACCATCACGCGGTCTGCGAATATGCT 181353 29 96.6 32 ..............A.............. CTGCAGTTGGATTTCGAGCAACAAACCTACGC 181414 29 100.0 32 ............................. TGCCGGCCGCCCTGCAGCCGTATTTGCCAAAA 181475 29 100.0 32 ............................. AGTTCGCGCGCTCGATTGCGAAATGGGGGTAT 181536 29 100.0 32 ............................. AGGGCGTGGCGCTGGGCCGTGCGAAGTACCGC 181597 29 100.0 32 ............................. CCAATACCGTTTTGCCGGCTCCCGTTGGCGCT 181658 29 100.0 32 ............................. ATTCGCGAACAACTGAATAGCAACGGCCCCGA 181719 29 79.3 0 ......T............T..C.GT.G. | ========== ====== ====== ====== ============================= ================================= ================== 52 29 99.3 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CGGACATCGAGACGATGCTGGACGCCGGCGGCCTGGATAAGCCGGAGTCCCAAGGCGTGGTGGACGCGGCGTTTCCGGAGGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAAAACGCGCCGCCCCGGCTGCGTGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTCGGCACTTACAACCGGAAAATCCGCGACTACCTGTGGCAACAGGTGGAGGAGGGGCTGGAGGACGGCAATGCGGTAATGGCCTGGCAGGCCGTCACCGAGGCAGGCTTCGACTTCGTCACCCTAGGCGCCAACCGGCGGATGCCGGCCGAGTTCGACGGAGCCAAGCTGGTGTCTTTTTGGCCTCCACCCGGGGCGGATGGGGCTGGCGAATAGGATGTTGTCGGCTTGGGCGGAAAGGGGAGTTGGGTTCTTTAAAAATCGGTAGATTTTTTGGAGGTGTTTTTGTTTTTAAAAATCAATTGCTTGCAATTGGT # Right flank : GACTAAAATTCGGCAAGTTACGCTTTGCACTGGGTGTCCCGCACTCCGCGTACCTCCTACCTACTGTTGCATCTCGCTTAGATATTGCGTCAGCCGCAGCGTCAGGCTGGCGCGGGCGGCGTTGGCTGGCCATACCGCGTACACCCCCAGAGCTTCCACCTGCCACTCGGGCTCGACTTCGCTCAGCCTGCCGGCTGCGATGTCGTCCGCCGCCAGGAAGGCCGGCGGGGTGGCCAGGCCGCAGCCGGCGATGGCCAGCTGGCAGACGGCATCCAGGCTGTTGGCGCGGATGGCTGGCTGGATGGAGAAGCTGTGCGCCTCGCCGGCCGCGTCTAGCAGGGTTTTGTGGTCGGGCCGCATGCGTATGCCCAGCCAGGGCCAGTCGGCCAGCTCTTGCGGATGGCGGGGCGCGGGGCGCGCCGACAGCAAGGCGGGCGCGGCCACCAGCAGGCGCGGCATGTCGAACAGGCGGCGCGATTTTAGCGCGCTGTCCGGCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //