Array 1 19473-18783 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZFN01000011.1 Photobacterium damselae subsp. damselae strain A-162 CONTIG_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19472 28 100.0 32 ............................ AAAATGGCGGTGCATAGAAAGAAATTCTAACA 19412 28 100.0 33 ............................ ATCGCCGCCACCATCACCGCAAGGAGGTGCCGC 19351 28 100.0 32 ............................ CATCTTATTACTCATATTATTAATGGCTGAGA 19291 28 100.0 32 ............................ CTATGAAATTTCATCCGTGTCAGTGCCTGCAG 19231 28 100.0 32 ............................ AAAGGAATATAAGCCCTATCAGTACGCTTACA 19171 28 100.0 32 ............................ GCCACCATCATCACAAGGAGGCGCGGAACCAT 19111 28 100.0 32 ............................ TGATGGGGGTAAACCCGATTACGGTTCTATCA 19051 28 100.0 32 ............................ AATGATTGGTAAGTTCATAGTAAAAGATAGAG 18991 28 100.0 32 ............................ GTTGTCAATACGACATTTGAAACTAGAGAGAG 18931 28 100.0 32 ............................ TAAGCACATCAAGAAAGGTCACCAACTTGTAT 18871 28 92.9 32 .......A.........T.......... CCGTCTAGTAACACGGGTTGAAAGTCTTAATG 18811 28 82.1 0 ...........CA........C..CT.. | A [18789] ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.9 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGAACTAATGGCTTTACCTTGGTTGAAAGGTTTGCGTGATTACACCAAAGTTAGTGCAATCTTACCAATACCTTGTGATATTGCAGGGTATCGCACTGTGCATCGCGTGCAAAAAAAGAGTCCTCATAATTTGCGTAAGCGTGCGGTAGCAAAAGGCCGAATGACTGAACAAGAGGCTCTGACGAAAATCCCTGATGCGTTACAAGAACGATTAGCTTTACCTTTTATTCAGATGCAGAGTTTGTCGAATAAGCAGGTAATGCGTGTTTATGTTGATCTAGGAGAGATTCAATCAGAACCTGTTTTTGGTGAGTTTTCTAGCTATGGTATGAGCCGTACAGCGACCATTCCTTGGTTTTAATCTGTAGACCCTTTTTTTAAGCTTATACTTAACTTATTGATTTATAAATAAGATTGTAATAGGTGAGAAAAAAGGGTTTTTTATTGGAAAATGACTTAAGCTCTTTAAAAATAAACCGAAATCGAATAAAGTCTTCAC # Right flank : GTAAACTTTGGAGCTAACCTTTGCTTTTGGTATCCTTAGTGCTTATCGCTAAGATCATTAGCAAAAGTATAAACATAGGTACTACATGCTCACAATCTCAAACAATGTGACGATTTCCGATTGGGAGATTGAACTTAATGCTATTCGCTCTGCGGGAAATGGTGGGCAAAACGTCAATAAAGTAGCCACAGCAATTCATCTTAGATTTGATATTAAGAAATCATCACTGCCAGCTATTTATAAAGAAAAATTACTTAAGCTATCAGACAGTCGAATTTCTTCTGATGGTGTGATCATCATTAAATCGCAGCAATACCGAACCCAGCTGCAAAACAAAGAAGCTGCTCTTGAGCGATTAAAAGAATTGATTTTATCTGCGATGGTTGTACAAAAAGCCCGTCGTCCAACAAAGCCAACCAAAAACTCCCAGCGTCGTCGTTTAGAGTCAAAAACCAAAAGGGGAACGACTAAAACGATGAGAAAGAAGGTTGATTATTAAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 29640-27931 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZFN01000011.1 Photobacterium damselae subsp. damselae strain A-162 CONTIG_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29639 28 100.0 32 ............................ AGTTTGTTACTAGATTTAATCACTCTATTAAT 29579 28 100.0 33 ............................ CAAGTTGAGTACCAATACCCTCAATTAGATTGC 29518 28 100.0 32 ............................ TTTTCCCCCTAGACCTAGCCTAAAGGGTTGAA 29458 28 100.0 32 ............................ AGGTTTCTAGTTTGTCTAAGATGGATGAACTT 29398 28 100.0 32 ............................ AGGTTTCTAGTTTGTCTAAGATGGATGAACTT 29338 28 100.0 32 ............................ AAGTTATTGCAGCTAAAGGTTCAAAAGATTAC 29278 28 100.0 32 ............................ TGTAACGCAACATGCGTAATTGCTTGCCCGAT 29218 28 100.0 32 ............................ AGGGATGTACTGTGAATAATTTTATCGCAGAA 29158 28 100.0 32 ............................ ATACAGCTGGAAGCCCATTGTTTGCGGTAATT 29098 28 100.0 32 ............................ TAACCTAAAGGATTGAAATTGTCAAGCAAGGT 29038 28 100.0 32 ............................ TTCCGTTGTGCTTGACATTTTTTCTTTAATAG 28978 28 100.0 32 ............................ AGCAAATCACCAGAATACTTATAACCGAACTT 28918 28 100.0 32 ............................ GCCATTTTTAGCACCCCATGCAACAATACCGC 28858 28 100.0 32 ............................ TGCACTAAAAGCTGCGCCCAAAGTGAGCCCTG 28798 28 100.0 32 ............................ AAGCAAACTTTTAAAATCATCAATTTTACTTT 28738 28 100.0 32 ............................ AGCTACATGGACGAGTAGAGATGAAACTATTG 28678 28 100.0 32 ............................ GAAACAACAACAGTCTGACCAACGTTTGATAA 28618 28 100.0 32 ............................ ATATCTCGCCACGTTACACCTTCTTTCCGTCT 28558 28 100.0 32 ............................ AACAAGAGGCCAAAAGGCGATCACAAATACTT 28498 28 100.0 32 ............................ TGCCCATCCAGTTGGTGTGGCAGTGTTTCCGT 28438 28 100.0 32 ............................ TGCGGGGCTTCTTTCTGAGATCGTCATTTCTA 28378 28 100.0 32 ............................ AACGTCAGCTCAGTTACAAGGAGTTTATGATA 28318 28 100.0 32 ............................ ATTACGCAGAACTACTTCATGGTAGCCTATAT 28258 28 100.0 32 ............................ CGCACTTTTTTTTGATTCAATTTAAATTAAGC 28198 28 100.0 32 ............................ ATTACCCTCAAACTTAAATTGTTCGATAAAAG 28138 28 100.0 32 ............................ ATCCACCAGCACAGCTTGAGCCATTGGAAGAT 28078 28 100.0 32 ............................ TGTCGCGTTCGATAATGTCGTGACGAATTTAA 28018 28 100.0 32 ............................ AGTGATATATGCCCATAACCTAACTTTTCGAA 27958 28 96.4 0 .................T.......... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.9 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GCTTCATCAGTGTTTGTGACAGTGTGGCATATCTTATTGGTTGGCAAAAATTGGTTTTAAAATGGTATTACCGAAAGACTCAGAATTTGGCGGTTGATTTCCCTGAAACAGGGTACAAATGGAATCAGTTGGGTCTATTAGCACAAAGCTTTTATGTAGAATATCGTGATTGGACTTATTCAGAACTGCTTTCTGAGTTTGAAAGTAATATGGAACAGATTCTTGTTATTGTCGCATCATTATCTAATCATCAACTCTATCAAGAACCATGGTACGAAAAATGGACGTTAGGGCGAATGATTCAGTTTAATACCTCATCGCCAATGAAAAATGTCAGAACTAAGGTACGAAGATTTAAAAGAGGGATGTGACCCTATTTTTTGACTTATTTATAAGTTATTGATTTATAAATATGTAAAATAGGACGCAGAAAAAAGGGTATTTTAGAATAAAGTGGTCTAAGTTCTTTAAAAATAAACCGAAATAGAATAAAGTCTTCA # Right flank : AATCCACTGCAGATCGGGGAGTTACTCCCTTTCTTTACTACCGAATAGGTAGATAAAACTTAGACATATTTTACTCTTTAATCTGATATTTCGTCATTCTTGCCAATAAAGTCGCATTTTAAATTCATCCTGTTGAATATACTAATGCCATGATAGTTAACGCATTGATATGATGTTGAAGATGAAAAAGGACTTTTCTCCTAGCGAGCTTAAAACCATACTCCACTCAAAACGTGCCAATCTTTATTATCTTCAGCATTGTCGAGTGTTAGTAAACAGTGGGCGAGTTGAATATGTTACTGATGAGGGTAAAGAGAGTTTATATTGGAATATCCCCATCGCCAATACGACCGCCATTATGCTTGGAACGGGTACATCGGTGACTCAAGCTGCTATGCGAGAGTTGGCTAAAGCTGGTGTATTAGTCGGTTTTTGTGGTGGCGGTGGTACTCCGCTTTTTTCAGGTAATGAAGTTCAAGTGGATGTCTCTTGGCTTTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //