Array 1 43-2225 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDP01000356.1 Acinetobacter baumannii strain ABBL035 contig-14000037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 103 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 163 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 223 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 283 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 343 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 403 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 463 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 523 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 583 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 643 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 703 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 763 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 823 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 883 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 943 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 1003 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 1063 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 1123 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 1183 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 1243 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 1303 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 1363 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 1423 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 1483 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 1543 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 1603 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 1663 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 1723 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1783 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1843 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1903 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 1963 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 2023 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 2078 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 2138 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 2199 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTAG # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 54-802 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDP01000837.1 Acinetobacter baumannii strain ABBL035 contig-5000076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 54 29 100.0 31 ............................. ACACGTTCTCTATATCGCTGTTTGCGGTCAT 114 29 96.6 31 ............................T TCAGTTGGATATGCCTTTGATACCAAGAAAC 174 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 234 29 93.1 31 .........................C..T AACCAAACTATGTCATCGATCGGAGATTTCA 294 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 354 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 414 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 474 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 534 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 594 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 654 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 714 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 774 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 13 29 96.3 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : GCAGCGTCAGATGTGTATAAGAGACAGAGTAATAAGTTTAATAACGACCTAGTG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2-1831 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDP01000280.1 Acinetobacter baumannii strain ABBL035 contig-12000069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 62 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 122 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 184 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 244 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 304 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 364 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 424 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 484 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 544 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 604 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 664 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 724 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 784 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 844 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 904 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 964 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 1024 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 1084 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 1144 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 1204 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 1264 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 1324 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 1384 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 1444 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 1504 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 1564 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 1624 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 1684 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 1744 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 1804 28 89.3 0 ....T.......AT.............. | ========== ====== ====== ====== ============================ ================================== ================== 31 28 96.3 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : AG # Right flank : T # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //