Array 1 89671-89392 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSR01000007.1 Sulfolobus acidocaldarius strain NG05B_CO5_12 NG05B_CO5_12_scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 89670 26 96.2 36 .........................C ATATCATCATCTCTCATCATCTGCCTGCAACGTATC 89608 26 100.0 35 .......................... CACATTCATCCCTATAGACATTTATTGAAAACGAG 89547 26 100.0 40 .......................... TTGCTTTAACATAGATCGGTGAAAGCATCTCAAAAGGTAG 89481 26 100.0 38 .......................... AAGTATATATCATTTGAATGAATGTTGAGAGCCACATT 89417 26 73.1 0 T..A.G.........AA......G.C | ========== ====== ====== ====== ========================== ======================================== ================== 5 26 93.9 38 GAAGAATCCCATAAGGGATTGAAAGT # Left flank : TGCCGATTCCCCTCTTGTTTTGGTACATCGAGGGAAATTTTCATGTAGGAGAGATTAAGTTTCCTTCTAAATACTTTTCAGTAATAGAGGTTGTTTAATTTTAGATAAAAGAAGGGAATTTATAAATTTATTTATAAACACTACTATGAACGTCTTTTGAAAAATTATACTATGAGCAAAGAAAATTATGAAAAACTTTTCAAGGTGACCTTACGATTTAAGTAGTTAATACTAGGTGTAATCTTACCATAATTTTCGATTTCGTCATAAGGTTTATAAACGTCATTTTTCGAGTCTCAATGCAACCTATCCCAACTTAGTCACAACCCCTTAACATTTATAAATGCACAACCATCTTTCAACTCTAGTTAAGCACTATGCGACCAAAAGACCTAAACATAATTACTAGGATTCAAGGTCGCATGATTAAGTTAGGGGCTTAAGCAAAAGTTTATTAACAAGAACGTCAAATTTAGGATAAGGGAATAATAAATACATCA # Right flank : CGTATTCATTTTTATATAGAACTTTAATTATTGAGTAGAAGAGGTCAGTAATGAACATTTTAACTATTTACTTTCCCATTTCTCTACGGAGAAGTTCATTAAGAACTTTGATGATAAGAAAAGGACTCTATTATAATGAAGTAAAAAGTGTTTAAGTCAAGCAAGTGAAGCATAGGTACTAAGAGAGTCCTTTAAAATTTTATAGGGTATATCCCCATGAAGTATCTACTTATCATATTCGATAACGTAATCGAGAGGCGTGTTAAGGGCGTATAAGTTATGCAGGATTGAAATACGCTCAATTCTTGCATCATGTATAGGCTATAACAGAGAGCTGGTCATGAAGAGTTTTAAGAGAAACTCTTTCTTTAGATAGAGAATCACTTTAGGAGCCCTCATACCCTTTTATCTAGTTGAGACATAGGAAGAAACTAGTGAAGATAAGTGTAGATATTTTTCTAAGTCAAGTAACCTCGCAAGATGCCGTGATCTTTAGGTTT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCCCATAAGGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 129672-129014 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSR01000007.1 Sulfolobus acidocaldarius strain NG05B_CO5_12 NG05B_CO5_12_scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 129671 25 100.0 39 ......................... CTCTGTTCACAGAAATATTTGTCAAGCTCAATCTTAAAG 129607 25 100.0 42 ......................... AGTTTTGGGAACACTTCTCTTCCCTTTATCTGTTAGTTCATA 129540 25 100.0 39 ......................... CTCAAATCGTTTGCGTACTGTTTAAAGCTTTTTAAACTC 129476 25 100.0 37 ......................... AGCACCCTATTTTCAGGTGCTGGCTGACTAGAACTTT 129414 25 100.0 38 ......................... GGGTATAAATAAAGTATGCCAGCCTGTGCTAATGACAG 129351 25 100.0 36 ......................... AGTTTATTATGTCATTGGACAGCAAGTCATACGAGA 129290 25 100.0 41 ......................... TTTTCTCCTTTTTTCATAATACTTCTTTCCATATTTCCGCA 129224 25 100.0 37 ......................... GCTCTGCTAACATTAGCCTCTTCTCCTGCTAGAGCTA 129162 25 100.0 38 ......................... ATCTTGTCGCTTATGTGAACGTCTAGGGAGTCGATAAT 129099 25 100.0 36 ......................... CCAAACCAAGTTAGGTTTTATGTTGAAGGGGACTCT 129038 25 96.0 0 ..............A.......... | ========== ====== ====== ====== ========================= ========================================== ================== 11 25 99.6 38 GATGAATCCCAAAAGGGATTGAAAG # Left flank : GAGAAAAGAGAGGATAGTCCAACCTGCAAAGAAATGTATCAACTGCGGATTCTTGCCCTACTGCAATCCCCTAAGGCAAGGGAGTCTTTATGTAAGGGAGATATAGGTGTTGTATTGAAAACTTTTCAGTATGTCAGACCTGTTAAATTTAGGTCAAATACGTGGGTTTATAAGTCTATTTATAAATATTTTGATAAACATATTTTGAAAAATAATTACAGATTGCCTGAGATGGCTGAAGAACTTTTTAAGTTTACGTTACTAAAAACATAATTGTAGGTTTGATGAATCGCACTCTTTTCTTCGATCTTTTCATGAAGTTTATAAATGTTGTTTTTCGAGTCTCAATGCGACCCATCCCAACTTAGTTACAACCCCTCAACATTTATAAATACACAACCATCTTTCAACTCTAGTTAAGCACCNAGTTCCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACCA # Right flank : ACGGCAATTATGGTTATATCATAATGATAATGCTAAGTCGAGCGTATTAGACTAGTTATATCTAAGGGATGCGCTTTACTCACAGGTAGTATAGGAGTAGTGTAGACTTGGAGGAGGAATAACGCCATTTATTAGCTCTACCTCCACAATAGTTTAATGCAGCAATAATGTCGTCTCTGGACAATCAATATAGATCTAGAATTGCTAGGAAGGGGTGCGTTTTCGTAAGCTATACTTCTCCTCACACGCACGTTAGTGTCTGTACTGAATTACAAGAAGATCTTCTACTTTAACGGCACAACACAGAGCTCTAAGCGATAAAAAAATTAATAATGAAATAAATATAAAATTAAGTATGAAAGATGGGAAAAAGATAGCATTCGTTAAGGACCACGGGGCTCACCTGAGGGTCAACAAGGGAATGATAGAGTGCTCAGTTAAAGATGAGGTCAAGTGGTCTGTGTCTCCTTCAGAGTTGTCCTCGATCGTCGTGATCTCAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 38205-39126 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSR01000006.1 Sulfolobus acidocaldarius strain NG05B_CO5_12 NG05B_CO5_12_scaffold7, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 38205 24 100.0 36 ........................ ATCATTGGAATTGGGCTAGCCCTATTTTTCTTGATA 38265 24 100.0 35 ........................ AGTTGGTAGTGGGCAGATATCTAGCCCTGACCACT 38324 24 100.0 36 ........................ TGATGTCGAATACCGGAGTCAAGATGTTGATGAAAA 38384 24 100.0 37 ........................ AAATAACGAAGATTTAAGTGGTTTTGAACCAAGAGAA 38445 24 100.0 37 ........................ TGATCACATGTTTTATCGGTAGTACATAATGTAGAAA 38506 24 100.0 35 ........................ GAGGAGTTTGATAAACTTTTGGAATTTCTTGAGAG 38565 24 100.0 34 ........................ GAAATATAGCAAGAGTTCTGTGGTCGCTATATTA 38623 24 100.0 37 ........................ ATCATTAGCACGATATTTCATCATCACTGCAGTAATC 38684 24 100.0 35 ........................ CTCAAAAATATAATGCGTAAGCTTAAATACCCAAC 38743 24 100.0 36 ........................ TTTTTATTCTATATTTGAATAAAGCATAAAGTAATC 38803 24 100.0 35 ........................ CTAATATTAATGGCAGTAGAAGTCTCGAACAACAC 38862 24 100.0 35 ........................ TATCTCGCAATAAATGAGAGAGAGTCGGCGAGTGT 38921 24 100.0 37 ........................ TATGTTTGTTGTATTGCTAGCGTAATATTGTATTACA 38982 24 100.0 36 ........................ ACACAATATCTTAGTCATTACTGGAATGACTACAAC 39042 24 100.0 37 ........................ ATCATTAGCACGATATTTCATCATCACTGCAGTAATC 39103 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 16 24 100.0 36 GTTTTAGTTTCTTGTCGTTATTAC # Left flank : TTCCAGTTCTTACCACCTCCAGAGGTAGATTTGGGTACAACGAGAATGCTATTGCGGGAACGAAGAACACAGTTATTATAGGTGTGATAATTAGTAAAGGCGTTACTTCACTTAAATGAGGGACTGCCGTCAACGCTTCAATAATGGCTATAACGGTGAGAAAAATGGGTACATACGCTGGAAGCAGCAAATACAGGAGAATCTTCGGATTACTCTTCACTATGTCAATTAGTCTCGTCAATTATCCTCATAAACTAAATCAAAATATTGAGAGAATAAAAACTTTTTCCTTATTTGTTACAGCAGAGTTGAAGGAGGGAACATTTAACGTTGCAGACTCCCCCTCCGCCGAGATTGGATCAATATGGTAATCAACTTTGTATGAGTACTGATTCTCATAACCACACAAGGGACACGTTATAACCCTACATAAGCGATAACATTTGGGACGTAAAATTTTGCTTCAAAATTAATATATGTGTCATGATATTTTACATGGA # Right flank : CTGTAGNGTTTTAGTTTCTTGTCGTTATTACATCATTAGCACGATATTTCATCATCACTGCAGTAATCGTTTTAGTTTCTTGTCGTTATTACTGTAGTAAATTGATATAATCGGATTGAAGAGAGTGGTTTTAGTTTCTTGTCGTTATTACAGGGATATCTGGAAGTAATACACCAGTACTATACGTTTTAGTTTCTTGTCGTTATTACGCCATTCAACTCAAAACTTATAGAAGATTACGAAATAGTTTTAGTTTCTTGTCGTTATTACCCAAATGCTAAAAATAGAAAAGGTAGGAGAGTTATTAGTTTTAGTTTCTTGTCGTTATTACCGGTCTTCCAAAATTACTTAATGCTCTTGATAATAAAGTTTTAGTTTCTTGTCGTTATTGCTAAGGCTAATTTTGATCGATAAAGATGAAGAAGAAAGGTTTTAGTTTCTTGTCGTTATTACTATCTAACCCTCTCTTTTTCAACTCTTTGAAGATAAAAGTTTTAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTCTTGTCGTTATTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 46464-39194 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSR01000006.1 Sulfolobus acidocaldarius strain NG05B_CO5_12 NG05B_CO5_12_scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 46463 24 100.0 35 ........................ AGCTCTTTCGCACTGTTATTTTACAATTTACACGT 46404 24 100.0 34 ........................ GCTTGTTGATTTGGGCCCATGCGAGGAGGATTAA 46346 24 100.0 38 ........................ TGATATTGTATCGTTGTAGTTAGTATTGTCCAGAAGAA 46284 24 100.0 37 ........................ AAGAACTCCCGGGAGCCCTGGTGGTATGCCCGAAATT 46223 24 100.0 38 ........................ ATCGTAAGAGAAGTGGGCTAGCGCTACCCTCCTCCACT 46161 24 100.0 38 ........................ AGAAAATATCTCAAGGAGGGCGAGGAAGTATGCGAAAG 46099 24 100.0 32 ........................ TGGATGCTGAGTTAACTCCCCAGTTTACCGTA 46043 24 100.0 39 ........................ TTTTAGCCTGACCATTTCCCTCGTTAAAAAATAAGGAAA 45980 24 100.0 34 ........................ TTTCACGCTCCATGACCTCAGTGAATATCTCATT 45922 24 100.0 37 ........................ TCATAGGGGCTATATTCAACAATACGTTGCTCCAGTT 45861 24 100.0 42 ........................ GAGAAGAAGCAAAGCATACCGCTCTACAAGGTTCCTTCAGTT 45795 24 100.0 36 ........................ TATGTCGATCTGTCCGGTGTGCTGGTGGGCGAGCAT 45735 24 100.0 39 ........................ AAATAGTGGTTTCCAAGACTGTGCAAATGCTTTTTTATA 45672 24 100.0 35 ........................ TTTTAGCTGTTTCTCCATTCCGTCCCACCAACTAT 45613 24 100.0 36 ........................ TAAAATATTTTAATGTTCCGGAGATAGATTATAACT 45553 24 100.0 35 ........................ TGATATTTGGAGTGGTCGTGATTTTAATGGGAGCT 45494 24 100.0 35 ........................ ATTAACTACATCGCTAACAGCTTGGTACAGCCTGT 45435 24 100.0 36 ........................ AACAAAAAAATGAAGTTTTGGGTTATGACTTTCTAC 45375 24 100.0 37 ........................ TAGAGGCACAATTACAGAATTTAGTAATTGATCAAAG 45314 24 100.0 37 ........................ TGAATTCTGCCTTTTTATATAACGCATTACTGTGATC 45253 24 100.0 35 ........................ TTTGAGACGCTGAAAGACGTAGCGAAAGACTCTGC 45194 24 100.0 34 ........................ ATTAAAATGCTGTAGAAACACTTGACCAAATATA 45136 24 100.0 38 ........................ TAAAGGGATCCTGACCTAAGGACTATCGGGCTTACTTT 45074 24 100.0 35 ........................ ACTATCTCAGCTATCGTCACTATCGACATCTTCAC 45015 24 100.0 34 ........................ CATTTTATTTATATAGCCTCGTTGTATAGCTTCT 44957 24 100.0 35 ........................ ACTGCTAAAGAGCGCAGGTATTGCGCAAGACTACA 44898 24 100.0 36 ........................ ATAATATACGACGCTCTGGTTAGGTAAAGGTACTCT 44838 24 100.0 35 ........................ AAAATTTCATTCTAAAGAGATAACAGATTTGGGCT 44779 24 100.0 35 ........................ AGTGAATGCTTGTCCTGAGCCTAGTCTGTTTAACG 44720 24 100.0 35 ........................ ACATTTGCTGGAGTTCAGAAAATATCAGTAACCAA 44661 24 100.0 36 ........................ AAAGTTGTTTCAGCCCCATCTTCAATAAGTGAAGGT 44601 24 100.0 36 ........................ AACATAAAAAACACTGCTAGTTTCTATCTGATTAAT 44541 24 100.0 36 ........................ ATAGATAAAATAAATAGTTAATGTTTCATAAAATCT 44481 24 100.0 36 ........................ AACAACGTGATGATACTGACATTTGCGGGCTATTGT 44421 24 100.0 34 ........................ GCTGTTCATATAACTGTAATAAATTAAGAAACTT 44363 24 100.0 34 ........................ AACTCTTGAATTGTTAAGTCTTTAATGAATGCAT 44305 24 100.0 34 ........................ AATGTACACCGTAGCCATTTTTTTGCACTTCTTT 44247 24 100.0 35 ........................ AAGAACAGCGATGTTTACAAGTCAGCACAAGACGT 44188 24 100.0 35 ........................ CATTTTCTTGGTTTTATCTATTTACCGTTTTAAAC 44129 24 100.0 37 ........................ CTAGATTGTTAGCACCGTGCATTAGCAATAATGCGTT 44068 24 100.0 34 ........................ GATTGCTGATGACGATGGAATAGTTACCACAAGC 44010 24 100.0 35 ........................ TTTTATTTTCACCGACAAAACGAAAAAAATTGAAT 43951 24 100.0 35 ........................ TTAAAGAGGCAACAAAGCGAAAAATTCTATATGCC 43892 24 100.0 35 ........................ TTGTTGTGCTAACTGGTTTATCGCATCCCCTATTC 43833 24 100.0 35 ........................ TTATGTTATTTGTACAAACTTCTTAGTTGCCAATT 43774 24 100.0 36 ........................ TTCTTGTAGTTTCGGGAAGACATTCTCACTGGTGTA 43714 24 100.0 39 ........................ TAGTAGTAGTTAATACTGCTGACTGAATTTTTCTTAGTT 43651 24 100.0 35 ........................ TTTATTTCAAAAAGTTACACTATAAAGATGAATTA 43592 24 100.0 34 ........................ TTGGGTAAGATCTAGACCTTATGTTCCTCTTTCT 43534 24 100.0 33 ........................ TTGGGATATATTGCACAGACAAACTTTGTCTCC 43477 24 100.0 40 ........................ ATGTTAGGAATATTGTTAAAAATCCGCCTATAATTCCGAT 43413 24 100.0 34 ........................ ATTTTTTATGCCATACCAACCCATTTTAATCAAA 43355 24 100.0 34 ........................ CAGTATATGCGTGTTGATGATTTTCTGAAGACTT 43297 24 100.0 34 ........................ ATAGCAAAGTACGAATAATCTATATTCCTGACCT 43239 24 100.0 34 ........................ ATATCTCATGGTTATGTTTCTTCAGATCCAGGCT 43181 24 100.0 35 ........................ GCGGCAGCTACTGGGTCTAACGCCTTCCACTCGAT 43122 24 100.0 35 ........................ ACATAAGCCAGCTAAAGAAGACGTATCTGACTGAG 43063 24 100.0 37 ........................ ATTATAAGTAAGGGCTGACTTGTTGAGTAAGACTGGT 43002 24 100.0 37 ........................ ATGATTATGAAATTTGTACAGCAAATGTTGATGAGAA 42941 24 100.0 36 ........................ AATGTCTTTTTTTATATAAATTTTTCGAGTCCTAAT 42881 24 100.0 35 ........................ AGGGAAAAGATCCTCTTCCTAGCTCCTTTCTCTTG 42822 24 100.0 36 ........................ CCTGTACAACGAAAACGGGACATTGTGGGCAATACA 42762 24 100.0 36 ........................ CTCGACCTCTTCTACTACTTCTGGTGGTGCACCCAT 42702 24 100.0 41 ........................ TTAATTAAAGCGGCAAGCTCTCTAGCCAGGCTAGATCCCTT 42637 24 100.0 36 ........................ AAAACAATGTTTTAGTTTTACAGACATTATAAAATT 42577 24 100.0 36 ........................ ACTTCAAGAATGGAATACATTTGTTAAAAATTTGCT 42517 24 100.0 34 ........................ GCCCAAGCTCAGGCTGGAAACAGTGGAAATCCGC 42459 24 100.0 35 ........................ ATATAACAAAGCGCATTGCTGATACGTTACACAGA 42400 24 100.0 34 ........................ TCCATGCCCTCGCCCCCGCCTTTTCTTTTTCTTT 42342 24 100.0 35 ........................ TTCCACATTGATGAGGTAAGCCTCTGAAAAGGTTT 42283 24 100.0 36 ........................ TGTGACCAAATTGAGGCAGAAGTATCCGCAGGGGAA 42223 24 100.0 36 ........................ ACCCCTGACTTTGTCCTTAAAGATAATGAGTTCTTT 42163 24 100.0 38 ........................ AGAAAATGAGTAGTGAAGTTAAGACAAAAAATAAGTCA 42101 24 100.0 38 ........................ TTCACTGTCAAATTTGTCTAGCAGTTCTTTTGCGACTT 42039 24 100.0 35 ........................ ATTATACCACGCCAAAGAGATGGCGTGAGGCGATA 41980 24 100.0 34 ........................ TATTTGAAGGCTTCCCTTAGGGCGTTCTTTAGCG 41922 24 100.0 35 ........................ GTTAAATTCGGCGCCCCAGTAGAAGTCTTTCTCGC 41863 24 100.0 38 ........................ CTATGTGTTGATGAGAGCACAGCTGGGCATGGAGCGTA 41801 24 100.0 35 ........................ AGATGTAGAGAAAACGATCGATTTAAGGCATGCGA 41742 24 100.0 35 ........................ AATAAATCAATCCTTTTTTTAAGGTCTTTCCAAGA 41683 24 100.0 40 ........................ TCAACACAAGGAAACACTTACAATTGGTATGAGTATGAAG 41619 24 100.0 34 ........................ CACTAGACACTGCAGGGACAGATATCAAAAACTT 41561 24 100.0 37 ........................ GTGCCCCTGTCTCCTGCAGTTTTAACGCTAAATATCT 41500 24 100.0 36 ........................ ACCTATCACTTTCCTTGCGAATTCAACCAGTGTTAA 41440 24 100.0 37 ........................ CACCAGCTGTGATGACATAGTCTTTGTCCAGTAATGG 41379 24 100.0 34 ........................ TTCTTCATAAGGATGTATCTGTACCAGTTCACCA 41321 24 100.0 36 ........................ GTCTTTACAGAACTTGGGGCGAAGTAGTATCCCGCA 41261 24 100.0 37 ........................ GATGAACTCGCCTGTGTTACTTGATGTGTATAAGGAA 41200 24 100.0 36 ........................ AACTCTGAGACTGAGGTTCTTTTTGTCTCACTAGAT 41140 24 100.0 35 ........................ ATAGGCTAGAAGCTGCAAAGAGGCTGGGCTGGAAA 41081 24 100.0 34 ........................ TACTGCAAGATCTACATTATAGTTCAATGATTTT 41023 24 100.0 37 ........................ ACGAGTCTCTTTATCAATATAGTGATGTTATCTACAT 40962 24 100.0 36 ........................ TTTTTTGCTTTTAGCTTTTCGTATTCTATTAATGAT 40902 24 100.0 37 ........................ AGTGGCTTAATGTACCTTTTGGTACTGACTATCCAAT 40841 24 100.0 34 ........................ GCTGATAGATAAAGATAAAATAAAAATAGACTTT 40783 24 100.0 37 ........................ GTCTACTTTAAGTGAACTTTATTGTAATCGTATCAAA 40722 24 100.0 33 ........................ TAAGCGTCTAAATAAGTTACCGACAATTGTTAT 40665 24 100.0 35 ........................ ATTGTTGAGAGATGCTACTTATGAAGAAAATGGAA 40606 24 100.0 38 ........................ CTTCATAACTCAACAAAACAAATAAGGTATGCCACTCT 40544 24 100.0 37 ........................ CTTAGCGTAAGAGAGCGTATATTATGCAGCGTATATT 40483 24 100.0 37 ........................ AATTTTCAGAGTCACTTACTTGGAAATTTTGTCTCTC 40422 24 100.0 36 ........................ CAAAAACTGCCGTTTAATGCGCCACTTCTAGAACAA 40362 24 100.0 35 ........................ TTTTGAGAATAGAGTCTATGAAATCTCCTTTTATT 40303 24 100.0 36 ........................ AGGTTCACTCACCCTCGCCTCGCAAGATATTCCAAA 40243 24 100.0 39 ........................ ACAATTCTTTCTTTTTTTATAGCTGTTGTACACATTCCT 40180 24 100.0 35 ........................ TAGTAATATCTAGCGACTTCCATAATTGCTGATGC 40121 24 100.0 35 ........................ ATTATAAAATTGATGTATTATACATTTGCAGAAAT 40062 24 100.0 39 ........................ CGCTATTCTCAAGTACTCTGCGATCTCGCCCTCTGAAAG 39999 24 100.0 38 ........................ TTCATATCGCTCTTTTGAATACTTCATCAATTCTTGTT 39937 24 100.0 34 ........................ TTTTATATTCTGTTGTTCATTTTTTATATCATTT 39879 24 100.0 35 ........................ ATATTATTAGGAATGACAGCCGGAGCTACTACTGT 39820 24 100.0 35 ........................ TTGTACAAAAAAGCTGAATTTAAGCAAGTCGGAAT 39761 24 100.0 36 ........................ ATTTAGTTTGAATATTATGAGTAATTGAGAGTTGGT 39701 24 100.0 37 ........................ TTGCTACAGGAAATGGAGAAGGTGAATATCAGGGAGG 39640 24 100.0 38 ........................ TTTTATCTTCAAAGAGTTGAAAAAGAGAGGGTTAGATA 39578 24 100.0 37 ........................ CTTTCTTCTTCATCTTTATCGATCAAAATTAGCCTTA 39517 24 95.8 37 .C...................... TTTATTATCAAGAGCATTAAGTAATTTTGGAAGACCG 39456 24 100.0 37 ........................ TAATAACTCTCCTACCTTTTCTATTTTTAGCATTTGG 39395 24 100.0 37 ........................ TATTTCGTAATCTTCTATAAGTTTTGAGTTGAATGGC 39334 24 100.0 34 ........................ GTATAGTACTGGTGTATTACTTCCAGATATCCCT 39276 24 100.0 35 ........................ CACTCTCTTCAATCCGATTATATCAATTTACTACA 39217 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 122 24 100.0 36 GTAATAACGACAAGAAACTAAAAC # Left flank : TGTCTTTACATTCATATGTGGAATTATTTTTGAACAATTTAATATGTTGTAGGGCTTGGGATCTCATGAACAGTTACAGTAGGTGAGCCTCTACACTTACTTCATTGAAGTTTGTCCACTGCGTTAAAAAGTGTAATATATAAAAATTTTTAAGTTACAAATATACCTTTAAAAATTTTTAATTTTATTACATGCCTAGATAATTAAAAGTAAGAGCTTCATTGAGTCTAGTAGTAAACTGTCTAAAATTCATAGAATTTTATTATACACTTATTAGTCTACCAGGAGAACATCGAAGAAATTCATGGATAAACATAAAAAAAGAAATGGAAGTGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGTACCTAAGGGCACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGGAGGCAAGGATCA # Right flank : GATTACTGCAGTGATGATGAAATATCGTGCTAATGATGTAATAACGACAAGAAACTAAAACNCTACAGTAATAACGACAAGAAACTAAAACGATTACTGCAGTGATGATGAAATATCGTGCTAATGATGTAATAACGACAAGAAACTAAAACGTTGTAGTCATTCCAGTAATGACTAAGATATTGTGTGTAATAACGACAAGAAACTAAAACTGTAATACAATATTACGCTAGCAATACAACAAACATAGTAATAACGACAAGAAACTAAAACACACTCGCCGACTCTCTCTCATTTATTGCGAGATAGTAATAACGACAAGAAACTAAAACGTGTTGTTCGAGACTTCTACTGCCATTAATATTAGGTAATAACGACAAGAAACTAAAACGATTACTTTATGCTTTATTCAAATATAGAATAAAAAGTAATAACGACAAGAAACTAAAACGTTGGGTATTTAAGCTTACGCATTATATTTTTGAGGTAATAACGACAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 58831-63588 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSR01000006.1 Sulfolobus acidocaldarius strain NG05B_CO5_12 NG05B_CO5_12_scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 58831 24 100.0 38 ........................ CTCTAAGAGGATCTTTGCCAGGGCATAGTAATAAGCTG 58893 24 100.0 35 ........................ GAGTTCAAATAGAATAATGGAACTGAAGATACATT 58952 24 100.0 36 ........................ GAAGCAGAAATTCGATGAGGCATTAAACGCATTAAA 59012 24 100.0 38 ........................ AACAGCATTAATATTCCGAGGAGGATTGCTAAACCGTT 59074 24 100.0 36 ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 59134 24 100.0 36 ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 59194 24 100.0 34 ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 59252 24 100.0 39 ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 59315 24 100.0 34 ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 59373 24 100.0 35 ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 59432 24 100.0 36 ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 59492 24 100.0 35 ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 59551 24 100.0 34 ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 59609 24 100.0 35 ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 59668 24 100.0 36 ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 59728 24 100.0 34 ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 59786 24 100.0 38 ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 59848 24 100.0 36 ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 59908 24 100.0 34 ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 59966 24 100.0 34 ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 60024 24 100.0 39 ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 60087 24 100.0 34 ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 60145 24 100.0 36 ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 60205 24 100.0 39 ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 60268 24 100.0 37 ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 60329 24 100.0 33 ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 60386 24 100.0 36 ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 60446 24 100.0 34 ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 60504 24 100.0 38 ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 60566 24 100.0 34 ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 60624 24 100.0 36 ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 60684 24 100.0 34 ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 60742 24 100.0 39 ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 60805 24 100.0 39 ........................ ATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 60868 24 100.0 37 ........................ ATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 60929 24 100.0 34 ........................ CACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 60987 24 100.0 37 ........................ CAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 61048 24 100.0 36 ........................ GCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 61108 24 100.0 38 ........................ GTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 61170 24 100.0 36 ........................ CTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 61230 24 95.8 35 .......................A CTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 61289 24 100.0 34 ........................ TATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 61347 24 100.0 36 ........................ GAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 61407 24 100.0 36 ........................ AAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 61467 24 100.0 35 ........................ AACGTTACGACCACTACTACTCAGAAGAAGATAGT 61526 24 100.0 37 ........................ GAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 61587 24 100.0 35 ........................ GAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 61646 24 100.0 39 ........................ AAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 61709 24 100.0 35 ........................ GTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 61768 24 100.0 33 ........................ ATGCAGGTACTATACTGAGCCTGATGAACAGCA 61825 24 100.0 34 ........................ AAATTTAAGGAAAATGGAGTGTATGTATATAAAT 61883 24 100.0 35 ........................ CTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 61942 24 100.0 36 ........................ ACATCAGCACTTATGGATACTACGCCATGCTCATCT 62002 24 100.0 35 ........................ ACTATTACTTTTGAAAATATGTAGATAAGACTGGT 62061 24 100.0 34 ........................ TTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 62119 24 100.0 37 ........................ AAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 62180 24 95.8 37 .......T................ TGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 62241 24 95.8 35 .......T................ GTAATTATTCTGATGGGTGCTATAATCTCGATGGC 62300 24 100.0 35 ........................ AGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 62359 24 95.8 34 ...........G............ ATGGGATCCTGATAATTCGGCATCAGCACAATTC 62417 24 100.0 35 ........................ CTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 62476 24 95.8 35 ...........G............ ATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 62535 24 100.0 35 ........................ CTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 62594 24 100.0 38 ........................ CTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 62656 24 100.0 36 ........................ GCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 62716 24 100.0 36 ........................ TAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 62776 24 100.0 35 ........................ GTGCAACAGGGTGAAACATAGATGAGCACATTTTT 62835 24 100.0 35 ........................ ATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 62894 24 100.0 37 ........................ CTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 62955 24 100.0 39 ........................ TTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 63018 24 100.0 37 ........................ TACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 63079 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 63138 24 100.0 43 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTAGNGTACTA 63205 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 63264 24 100.0 36 ........................ CATTTTAGCTCAAGCATCACCAGCATCAATTGAAAG 63324 24 100.0 36 ........................ ACCGTTCCGTAGATATTATTACTGTAACTCCCTCCC 63384 24 100.0 37 ........................ ACTGGGCTCCCCGTGATCACTCCAGGTCCTTATGTTG 63445 24 100.0 36 ........................ GACGCTAAAAAGCAAGAACAACAATCACAACAATCG 63505 24 100.0 36 ........................ TTTCTTAGTGAATCCCATGTACGTATATCTAATTTA 63565 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================================== ================== 80 24 99.7 36 GTAATAACGACAAGAAACTAAAAC # Left flank : ATCACTTAGAGTATAAAACTTCCTCCTCACGTTCACTAAAGAGTTCAAGAACGGCGACACTAGGACCACATCGTTTCTCTTTCCGTGGACGAGAACTGGTATATTTAGACTGGAAAGGAACAAGATCACCTCTGATGTTAGCCTAACATTATTACCGACAATGACCACTAACTCTAGGTCCAGACTAGACACAGTTAAGTTCTTTCCAACGGACCATGTCATCTGAAGATCTGAGCCTTTCCTCATAATTGTAGCGTTTTTAATCACTAGAATGGACATAATAGAAATTTTTCTCTCAAAAATAATAAACTTTTATCATAATTAATAAATTTTGGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGCACCCCAGGGAACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGAAGCCAACGATCA # Right flank : CACTGTAACTATTTAAAATAGAATGATGAGAGAATGACAAAGCCTTGCCGTTTATGGCGAGGTAAAGGTTTCTACTTACGAGAGAAAAGTTGTTATTAAGAGGAAGCCCGTAAGAGCATGGGTCAGTCAGTGTGTGTCCCTCTTTCCTGGTACATATCCCTGAGTCTCGAGGAGCGTGGAGTTAGGGCAACTCCACCAAAGGGATAGGGGTTGAGTGGCTGAAGGCTCAGCCAGTGGTCTACCACTGAAAGAGTGGAGCGGAGCGGGCTTCTGAGCCCACTAGCTATGAAGTGATAAAAGTGAAGGTGATAAACTACAGACCTGTGAACTGCCCTAGGTAACCCTCACTCTTTAGAGCGAGGAGGAAGTCAGTATCACACCAGATGCTGTGATGTCTGTTGCAACCTTAATTGCAATTGTATCCGACGAGACTGTCATGGGAATCATTCAAACTTAGAATACATAGATCCTCAATTCATCCTCTCCAATCATATGTCTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //