Array 1 35192-35829 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRJ01000066.1 Lactobacillus crispatus strain UMNLC20 SNF2W1B3L10S3019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35192 29 100.0 32 ............................. GTCAATGCAATTACTTATAAAGAAGTATTTCC 35253 29 96.6 32 ............................C GACCGACATTTCTTTTTTAACGCCTTCAAGTG 35314 29 96.6 32 ............................C TCCTCGTTAGCTCTTTGATCCTTTCGGGATCA 35375 29 100.0 32 ............................. CATTCAAAAATTTATGATGAAGCTAAATTCAA 35436 29 96.6 32 ............................C CAAAACGTCCAAACCAACTTGCAAATGTTTAG 35497 29 96.6 32 ............................C CAAGCTGAACATTTTGTTGATTATAAGTGTCA 35558 29 100.0 32 ............................. AAAAGTGGGCGATTGGCTTACTCGCTATTGAG 35619 29 100.0 32 ............................. CAATCACTGGTGAAACTTATGTCACTGATCAA 35680 29 100.0 32 ............................. GTTGGTGCATTAATGGAAGATGCATATTTAGA 35741 29 96.6 32 ............................C AAGGCTGTCAATATCACCGTTCCAACGTGGCT 35802 28 86.2 0 ..............C.......-C...T. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AAAGCACTATTGAGTGATAAGAAGTTTGATCAAGCTGTTTTTTATCTGATGGATAATTTGAATTTATTAAAACAATCATTAAGCGCTGATATGGATTATAGTCAATTATTTGAAAAACTGCGAAAGTTAAATAAAAAATTAAAGGTATTTCTAAGCCTTTTCATTATATGCCTAAAAAAACACGTACTATCAATCAGGGAAGGAGAGCAATTAATGCCATAATTAGCAATATTATTGGTGCTGATTGTAAAAAATTACAAAATTTGCAAGATGAACAAATCTTTCAGATGTATCTTGAAGCTAAGCTGCTAAATCAAAATTGGATGAAGCTTAACGATGATCGGGGAGTTAGTCAACGAATCAGAAAAAGAGAATCTTATTTTATTCAATTAACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTGAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTTAGT # Right flank : TACTCTTGTATCAAGGGATTTCTCTAAAAATAAAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCCAAACATCGTTATACTAAAGAAAGTGTTGCATCGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAGAAGTCCTAGTCATTGAAAAATCTAATCAAATGTATGGTGGTACTTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16885-17159 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRJ01000052.1 Lactobacillus crispatus strain UMNLC20 SNF2W1B3L10S3016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 16885 28 100.0 34 ............................ TCGCACAGGCTGTTAAGACTTTGCAAACCGATCA 16947 28 100.0 33 ............................ CAAGAAACGTGCCGAGCTTAAGTCCAAACAGGC 17008 28 100.0 34 ............................ TGTAATTGTTGTATCGTCGTGTGTATAACTAGTG 17070 28 100.0 33 ............................ CTCAGCACCGTGAGTGATTCCGCCATTTCCGTA 17131 28 85.7 0 .......................A.ATA | C [17153] ========== ====== ====== ====== ============================ ================================== ================== 5 28 97.1 34 GTATTCTCCACACATGTGGAGGTGATCC # Left flank : CAAGACATAAATTACCAACGATCAATACTCTTAGATACATTAAATATTTGGACCGTATTGATTTTACTTTATTTGATTTAAAAAATTATTTTGAAGGTAATAAAAACACGCCGCTTGCTAGAGCTTATAAAAATGAAGTGACTAATCTATGGTTATCTCAATTTTATGATTTTCCATCCTTTGTAAAAAAGATGCAATTAGGACGTTTTGTTGATAAAAAATATAACGTTTTGAACATTGCTAGTCGGCAAAATGAAATCATTAAAAAATTTCCTGCAAAATCAGAATTATCTAATTCTATGCCTATATATGCTGACTCCCTGATTTCTTTAGTAAAAGACAATATAATTTAATGAATGACCAGGCTGAAATAATTTGCAAGCACTTTGTGTAGGTTCTTTTTTATATCGATAGATATTAAAGAAACACTTTGTGTTAAAAGCAATAAAAAATGCTATGATTTTAGGTAGGGATTGTTGCTGTAGCGGGATTCATTTAGT # Right flank : AGCTGCTCTGAAAAATATTTTCTATAGAGTGACTGCTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCTTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACACATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 19887-22175 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRJ01000052.1 Lactobacillus crispatus strain UMNLC20 SNF2W1B3L10S3016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19887 29 100.0 32 ............................. ACTTTGTAAATTAATATCTCTATTAAGTCTAG 19948 29 100.0 32 ............................. CCAATTTACGATTGGATCAATAAGAAATGGTA 20009 29 96.6 32 ............................C TATTTTAGGCGCTTATACAGCGCAAAATTATG 20070 29 100.0 32 ............................. ATTATAAGAAGTATTTTTATTAAAATCATCGG 20131 29 100.0 32 ............................. GTCAATGATTTTATTCTCAAAATCAATATCAG 20192 29 100.0 32 ............................. ATAATGGTTTACCAGATACTCTAAAAAGTTCT 20253 29 96.6 32 ............................C TAAGTTTGTCAAATTCACTATTTTTACCAATT 20314 29 96.6 32 ............................C AAAATATTTAGCAGCATGTCCAGAAAATGCTT 20375 29 100.0 32 ............................. AATTTCATTAGCAAGCGGTCTTCCGTTTCTAT 20436 29 100.0 32 ............................. ATTGTTGTGAGTTTGCATGCCATCTGGTACTA 20497 29 100.0 32 ............................. ATCCTTGTTATACTGTTCAATGTAAGTTAAAT 20558 29 100.0 32 ............................. ATATCTACTCGGCTGGAAACAATCCAAACCGG 20619 29 96.6 32 ............................C AATTCTTCCAGTAACCGGCGCAGCAACATAAG 20680 29 100.0 32 ............................. AACTCAATTAATAATGGTTTGTTAACTCCTTA 20741 29 100.0 32 ............................. ACCACTAAATGTTGGTTAGCAAGTGGTGTAAA 20802 29 100.0 32 ............................. CAGAAACAAGGTTCAATAGATGTATACACCTA 20863 29 100.0 32 ............................. GCCGTTCTTTATTGCAGTAAGGATTTAATTTG 20924 29 96.6 32 ............................C CAAATCGTTGACGGCAATTTAAGTGTGATTGG 20985 29 100.0 32 ............................. AAGTTAACTTAACATCACTATCAAAAACATCT 21046 29 100.0 32 ............................. GACGCCCAGTGGAGAGCCCTCAATTTTAGTCG 21107 29 100.0 32 ............................. ACTGCAATCTTGTTGTCTTGATCTTTGTTAGC 21168 29 100.0 33 ............................. GATGTAAGAGTTCTAGTGGCCTACATTGACGAA 21230 29 100.0 32 ............................. ACTCGGCTTATTAAAATCATTCAGATACGTCA 21291 29 100.0 32 ............................. GTGTAAGGAGGTTGTTTACTAATGACTTTGGC 21352 29 100.0 32 ............................. CACGGTTGAAATGGCTAAGCAACTAGCGATGA 21413 29 100.0 32 ............................. GTATGAAGTAGTGCCCTGCAGATATGTAATAG 21474 29 100.0 32 ............................. GAGTAAGGCAGAGAGAGCACAGTACTTAGCCC 21535 29 100.0 32 ............................. CAAATACGCTATTTTTAGAAAATGGTGTGACA 21596 29 96.6 32 ............................C ATGTGTGAGCCACCTTTGCAATAGAACTTACC 21657 29 100.0 33 ............................. AACCATTTTTGTTGTGAAGGGGAATCCCGAACA 21719 29 100.0 32 ............................. AAGTTAACTGGTGGTACTTCATATTTTTGGAA 21780 29 96.6 32 ............................C TAATCCACAGCCTGCTGGTGGTGGTCAAGATT 21841 29 100.0 32 ............................. CACTTGCTCTTAATGCCAGACAGATTCTCTAA 21902 29 96.6 32 ............................C ACCAATATTAGCTGTTTTACCGTTTAAACCAG 21963 29 96.6 32 ............................C TAGCAGCCGCAATCAACCAGCACTGTAGTAAA 22024 29 100.0 32 ............................. AGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC 22085 29 100.0 32 ............................. TTGGTGCAGTGAATGAGAAATATGGGAATGCT 22146 29 82.8 0 ...........AC....T......T.A.. | A [22167] ========== ====== ====== ====== ============================= ================================= ================== 38 29 98.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACGTACACTATTGTAGCTCAGCAGTTTTACGATAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATGTTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAATTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 43651-44351 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRJ01000052.1 Lactobacillus crispatus strain UMNLC20 SNF2W1B3L10S3016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43651 29 100.0 32 ............................. ACTTGATCGCAATTTATTTTTATATCCGTCTG 43712 29 100.0 32 ............................. AATTGCGTTTGGTTCCGCTCCGAACTTACCTT 43773 29 100.0 32 ............................. ATAACCACCTAAAGTACCAGTACCTTCAACAC 43834 29 100.0 32 ............................. AGATTAAATCCTTATCAGGTCGTTGTATTGGG 43895 29 100.0 32 ............................. TTCTTTCATTTAAATACCTCCTGTTTTGCATA 43956 29 100.0 32 ............................. TTAATCCTGATTGGGTAGCGGATATTCATCCA 44017 29 100.0 32 ............................. ATCCTGCTTGCTTGGGCGCTTAATTCTCTTGA 44078 29 100.0 33 ............................. AATATCCGCCTATTCCAAACTGCCAAACATACA 44140 29 96.6 32 ............................C TATTCATTTAAAGCAAGGTGCTAACTTATTGC 44201 29 100.0 32 ............................. ACTCAAAAAGATGTTATATACACAATGGAATA 44262 29 100.0 32 ............................. GGTAGGGGTGGTCATATACTTTATGTGTGAGT 44323 29 86.2 0 ....................T..AT.G.. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTTGCGGATGTTTAGAAAAAGCGGTTAATTCATGAAGCAATTGAATAAAACCAGACAGTAGAATTCGACTTGCTTACATCAATTCCAAAAGTAACTTGCATAATATAACCCCCTAAGCTCAAGTAGTAAAACGTATTTACTTAAGAAATCAGATCTAATTTTCTAAACTCGACATCTAAGTGTCCACATTCTTCGAAGATACTATTGAAAACTTAAGTAAAACTGCCAGTTTTGTATACGACATCAAGTGTCTAAAGACCTCAGGGCATATCGTTTTACTACTACTTTAATTCTACAAAAGAATAAAAATAGTGAATCAATTATCCCGTCGGATAACTAATTCACTATTTAGCTTAGAATGTTTTGTATATTTAGGGAGACAAGAAAATTCTGTTGTTGTGTGACTAATGGGATTAAAATAGATACAATAGTAATGACAAAGTGATGAAATTTTGGGATCTATCGTTTTGTGATTGTTGTTATATCAGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGAAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGTACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGTGCAAAGAAAACACGGAAAAGATTAATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTGCTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //