Array 1 997020-999122 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043664.1 Salmonella enterica subsp. enterica serovar Kentucky strain 161365 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 997020 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 997081 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 997142 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 997203 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 997265 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 997326 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 997387 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 997448 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 997509 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 997570 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 997631 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 997692 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 997753 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 997814 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 997875 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 997936 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 997997 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 998058 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 998119 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 998180 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 998241 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 998302 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 998363 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 998424 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 998485 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 998546 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 998607 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 998668 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 998729 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 998790 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 998851 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 998912 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 998973 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 999034 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 999095 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1016755-1018736 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043664.1 Salmonella enterica subsp. enterica serovar Kentucky strain 161365 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1016755 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 1016816 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 1016877 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 1016938 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 1016999 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 1017060 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 1017121 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 1017182 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 1017243 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 1017304 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 1017365 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 1017426 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 1017487 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 1017548 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 1017609 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 1017670 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 1017731 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 1017792 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 1017853 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 1017914 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 1017975 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 1018036 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 1018097 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 1018158 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 1018219 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 1018280 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 1018341 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 1018402 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 1018463 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 1018524 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 1018585 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 1018646 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 1018707 29 100.0 0 ............................. | A [1018734] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //