Array 1 15432-17376 **** Predicted by CRISPRDetect 2.4 *** >NZ_POTE01000067.1 Vibrio cholerae strain IDH-06787 sctg_0067_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15432 28 100.0 32 ............................ TCTTATCGCTGGTGGACTCGCTTTAGAGCAAG 15492 28 100.0 32 ............................ GTTCTTGTAAATCGCAACGCCGTGCGCTTCTG 15552 28 100.0 32 ............................ TCAGAAATAAATAGCGGGCACTTGGTATTCAA 15612 28 100.0 32 ............................ TGATAAAGTTTCTGCTGACTCATTTCGCCATT 15672 28 100.0 32 ............................ AAACGTTGAGCACTTCTCAAATGAGATAGAGT 15732 28 100.0 32 ............................ AATGATGAGGAACCGACTGGTTGCGCGAGTGG 15792 28 100.0 32 ............................ GATAAAGACGATATTCAGACCAAAGTTTTTAA 15852 28 100.0 32 ............................ TGAATGAAGTAAAGGCGTGTATGTCATCTGGA 15912 28 100.0 32 ............................ TTGCTTGATGGTGAAGTAACCGCGATCGATAA 15972 28 100.0 32 ............................ TATTAAATATCGAGCGCATCAATGATGATATG 16032 28 100.0 32 ............................ AAGCACATAGCCAGACATCATCGAACCACTGG 16092 28 100.0 32 ............................ TTTTTCATAGGCTCTTGTTGAGTTTCCACTCA 16152 28 100.0 32 ............................ GATCTTAAACATTCTGCGACCAGCTTTGTCTT 16212 28 100.0 32 ............................ TTTTCTAACGAGTCCATGCGATAAGCAAAAAA 16272 28 100.0 30 ............................ TTCAAATAGGGCTCGGGCGGCTTGTCGGAT 16330 28 100.0 32 ............................ TTAGTTTGGGATTGTCGTGTGGTGTGTCCGGT 16390 28 100.0 32 ............................ AAACGAAAGCCGTAGCCATACAGTTAAAGTAA 16450 28 100.0 32 ............................ TCTACGTTTACTTCAAAGCAGTATCTTGCTTT 16510 28 100.0 32 ............................ TGTAAATAATATTTCTGCCAAAGTGTAGAGCG 16570 28 100.0 32 ............................ TGAACGAGTTGGACAAACTCAGGCTCAGGCGA 16630 28 100.0 32 ............................ TTAACCAAATAGCTAGGCAGTTAAACAGCGCT 16690 28 100.0 32 ............................ TGGCTTCTTGTTGGTGCGTGTACGTGGAGTAA 16750 28 100.0 32 ............................ TTTTCTCAGTGCCTCAACAATGCCCACGCCAC 16810 28 100.0 32 ............................ ATTTAGCCTAGCCGCCGCCTCTGCGGGTGCTT 16870 28 100.0 32 ............................ ACAACAGCAAGGCTTATCCACCCGAGAAGCAT 16930 28 100.0 32 ............................ TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 16990 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 17051 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 17111 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 17171 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 17231 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 17291 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 17351 26 82.1 0 ..........AT.............T-- | ========== ====== ====== ====== ============================ ================================= ================== 33 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTGCTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2202-3850 **** Predicted by CRISPRDetect 2.4 *** >NZ_POTE01000053.1 Vibrio cholerae strain IDH-06787 sctg_0053_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2202 28 100.0 32 ............................ AATAGCCGCCAAAAACATCTGTTTTGCTTAAT 2262 28 100.0 32 ............................ ATGCTTTTTAAAGGCTTCTTCGACAAAGGCAA 2322 28 100.0 32 ............................ TGACTCCTGTGATTTCATAACCATCACGCTCT 2382 28 100.0 32 ............................ TCATCAACAAACACTACTCGCGTTGGTACTGA 2442 28 100.0 32 ............................ GTTTTGAGTAGACTGATAGAATTTGCTTTGCC 2502 28 100.0 32 ............................ GTTATCCCAAATACGAGATGCGATATTGTTGG 2562 28 100.0 32 ............................ ATTGTAACCGATCATGTGAAGTTCTACTCTGA 2622 28 100.0 32 ............................ ATGATTTGGAAGCAGGTTGTTTCATCCGATTG 2682 28 100.0 32 ............................ ATAAGACGGATGACGTTTACGCCATGAGTCGT 2742 28 100.0 32 ............................ GCACGCTTTGTACGCCGAGTCGAGCCACTGGT 2802 28 100.0 32 ............................ TCGATGCCGTCGTTTTCGTCATCCTCGACTAA 2862 28 100.0 32 ............................ CATAACCTGCGCTTTTGTGCCTTCAGGTGTAT 2922 28 100.0 32 ............................ AATCTCGATAACTTCAACGCTGTTCGGATCAC 2982 28 100.0 32 ............................ CTCACGGGGCGCAGCAACCTGTAACGATTGAT 3042 28 100.0 32 ............................ AGAACGAACGCGACTCGCTCTAGTATTATTTG 3102 28 100.0 32 ............................ CCTATGCCCGATAAGACAAAGAAAGGTAACGT 3162 28 100.0 32 ............................ TCCAGCGGCTTACCTTGCATCTTGCGAGCCGC 3222 28 100.0 32 ............................ AAGCCGTGAGAGTCTTTCTTGATAGTGATTTT 3282 28 100.0 32 ............................ TGCACGAAATAGTAAATGAAGCATTGACCAAT 3342 28 100.0 32 ............................ ATTGGCGTTAAATAGTGGGTTCATTATTTTTC 3402 28 100.0 32 ............................ TGTAGACGCATGTTCAGTTTAACGCGGTATGG 3462 28 100.0 32 ............................ GTTTTTAAATTGCCCTTCGAGTTCGCTTTTTT 3522 28 100.0 32 ............................ TCGCTTACTTTCATTCCAGTTACTTCGTAGAT 3582 28 100.0 32 ............................ TTTTTCCCACCCCATTTGCTCGAAAGTTCTTA 3642 28 100.0 32 ............................ AGAACGAACGCGACTCGCTCTAGTATTATTTG 3702 28 100.0 32 ............................ CCTATGCCCGATAAGACAAAGAAAGGTAACGT 3762 28 100.0 32 ............................ AATCTCGATAACTTCAACGCTGTTCGGATCAC 3822 28 92.9 0 ......................G.A... | T [3842] ========== ====== ====== ====== ============================ ================================ ================== 28 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGACCTCTCGTCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGGCGCAATTTAAGCAGTGCAAAGCTGCGGCGCTTAATTGCACGAGGGAGTATCAATAAAGAAGGTGAGCAGCGCTATAAAAAGAAGATGCTGAGCCAGAGTATTAAAGCTCCTTATCTTGACTTACAGAGTGGCTCTACAGGGCAAAAGTATCGTAAATTCTTTGAGTTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCTTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : ATCCTTATATATCTTATGGTTGAAGCTCTCAAAGGTTGAGGGTTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAAATGTGGTAGCGTTTCTCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACTAAAATCGACCATTAATGCCACTACGGATATGAGTCAGTCTGCTTTTCTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGGGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTATCTGCAAGAGAGTATGACTCAAGATGGCCGTGACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //