Array 1 86316-88052 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBK010000004.1 Salmonella enterica subsp. enterica serovar Reading strain HA3-FL1 YZU1232_004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 86316 29 100.0 32 ............................. GCGTGCAGCGTGTTTTAAAGGGGGTTTAATAG 86377 29 100.0 32 ............................. CCATCGCAGAAAACAAACCGGGTTTTATTGCG 86438 29 100.0 32 ............................. CCCGCCCGCACAGGGAGGCGGTAACAGCTCAA 86499 29 100.0 32 ............................. GAAACCGCCCGATTCAAAAAAACGGCCTTCTT 86560 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTTTCTC 86621 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 86682 29 100.0 32 ............................. GCCAGCCCAACACCAGCAATAGCAGCAGCTAC 86743 29 100.0 32 ............................. ATGAGGCCGCGATGCGCGGCTGGTCAGGTGAG 86804 29 100.0 32 ............................. TAGGTTTCTTCCTGAAGGCGAAGCATTTTCTT 86865 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 86926 29 100.0 32 ............................. CGGCGGGCTCGCTATCAGCCTTGCGGCGTTCC 86987 29 100.0 32 ............................. TTATTATAAGCGCACTCAGGCCGGAAAAGTTA 87048 29 100.0 32 ............................. GCTATTTAGCACCTTGCGGTGTTCTGCTATGC 87109 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 87170 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCACCAGGTTGAA 87231 29 100.0 32 ............................. TCTCAATGGGAAAAATCAAGTCAGATGCTTCA 87292 29 100.0 32 ............................. CGACGGTGGCTGAGTTAAAACAGGCCTGGAAA 87353 29 100.0 32 ............................. ATCGACGCTGGTCTGGTGTGGCGCGACGGACG 87414 29 100.0 32 ............................. AACGCTTTTATTTTTTATGACCCCCCAATTTG 87475 29 100.0 32 ............................. ACCGAGGTCGATCTGCTGTCTGACGTGCAGCA 87536 29 100.0 33 ............................. CACCCCATCATCTTCCGCAATCCACATTCCAGC 87598 29 100.0 32 ............................. ATTGAACCCGCCTACGCGCGGGTATTTTTTTC 87659 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 87720 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 87781 29 100.0 32 ............................. CGTTCGAACGCTACACCCTGGCAAGGGCAACT 87842 29 100.0 32 ............................. TCGCCCTTTCGTTTCGTGGGAATGTTCAACGC 87903 29 100.0 32 ............................. GTCTGCATCGCGTACAATGCGCCCGCATCGCC 87964 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 88025 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 104314-106522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBK010000004.1 Salmonella enterica subsp. enterica serovar Reading strain HA3-FL1 YZU1232_004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 104314 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 104375 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 104436 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 104497 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 104558 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 104619 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 104680 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 104741 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 104802 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 104863 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 104924 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 104985 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 105046 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 105107 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 105169 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 105230 29 100.0 32 ............................. GAAATATTTGCATGGATAGTTGCGCTTTATAT 105291 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 105353 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 105414 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 105475 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 105536 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 105597 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 105658 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 105720 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 105822 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 105883 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 105944 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 106005 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 106066 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 106127 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 106188 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 106249 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 106310 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 106371 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 106432 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 106493 29 96.6 0 ............T................ | A [106520] ========== ====== ====== ====== ============================= ========================================================================= ================== 36 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //