Array 1 245558-244491 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWMA01000001.1 Salmonella enterica subsp. enterica serovar Birkenhead strain NCTC 7744 NODE_1_length_530896_cov_23.5148_ID_5016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 245557 29 96.6 32 ...........................T. CGCTGTTTCATGTCGTCAATAGCCTCCATAAT 245496 29 100.0 32 ............................. TTGCGCACGACAAAATTTTGGTTTGATGCAGC 245435 29 100.0 32 ............................. TTGGGTACTCATCTGCTAAAAATGCACGGCAT 245374 29 100.0 32 ............................. CGGTCCGGTTTTGCGATGCTCCAGCGCTCGAA 245313 29 100.0 32 ............................. GCGAATGGTGCTTGCACCTGAAGTTAAGCCCC 245252 29 100.0 32 ............................. CTATTTTCCTCGCATCTACAGGCAGGGTGAAA 245191 29 100.0 32 ............................. TCGGATAACGTTTCGTCAGCGCGTATCATGCC 245130 29 100.0 32 ............................. TATTCAGGGGCTACTAAACGGCAACGCAAAAA 245069 29 100.0 32 ............................. CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 245008 29 96.6 32 .............C............... ATATTCAAACGGCGCGGGGGGAGACATCCGGA 244947 29 96.6 32 .............C............... GTTACAGTATCATGTAAAACTGTATAAAAACA 244886 29 96.6 32 .............C............... ATTGAAAAGCTGGCGATAAACAAGGCCCGCCA 244825 29 96.6 32 .............C............... ACGCAATTAAATCATGACGATTTGCGCGGCCA 244764 29 96.6 32 .............C............... TATCAGTACCACATTCCGTTTTTCGGGACGGA 244703 29 96.6 32 .............C............... AATTATCGGTATACGTATTTGCATCAATCAAT 244642 29 96.6 32 .............C............... TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 244581 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 244520 29 89.7 0 A...........TC............... | A [244493] ========== ====== ====== ====== ============================= ================================ ================== 18 29 97.9 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 263175-261805 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWMA01000001.1 Salmonella enterica subsp. enterica serovar Birkenhead strain NCTC 7744 NODE_1_length_530896_cov_23.5148_ID_5016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 263174 29 100.0 32 ............................. CTTACCAAGGGCGGCTTGAGAGAGTTTCAGTT 263113 29 100.0 32 ............................. TTTTTTTCTTTTAAATCAGTAAAGAAGCGCCA 263052 29 100.0 32 ............................. AATGCGTTTTTGTTTATTGCTAACCTGGAAAA 262991 29 100.0 32 ............................. ATCACAGTCAACAAACACTCTGCGATTAATGG 262930 29 96.6 32 ............................A TGACTACCGGGTTATTACCAATATCATCCATC 262869 29 100.0 32 ............................. CGCAGGCAGCGCAACAGCAGCAAATGGCAGCA 262808 29 100.0 32 ............................. GAATTGTTGTAATGGGAACTGGTTTAGCTATC 262747 29 100.0 32 ............................. GCGTTGCACTGACTTAAACACAGATTCGCGGG 262686 29 100.0 32 ............................. TAGCCCAGGCATATGATGCGGTGTATCAGCAA 262625 29 100.0 32 ............................. CAGTAGCACTCATGCCCCATTTTGCTACGAAA 262564 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 262503 29 100.0 32 ............................. AGATCAGATTGATGCTGACTGTCAGCCTCAGG 262442 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 262381 29 100.0 32 ............................. ATGCAAAAAGCTGAAGCGGAACGAATGAACAC 262320 29 100.0 32 ............................. CCGCCACATCGGAAACGGCAGTATTGCCACAT 262259 29 100.0 32 ............................. TTAATTTCGAGGCTGAATTAGACGGCGAGTTT 262198 29 100.0 32 ............................. AAACCGCTTTAATACGCGAATAACCGTCTAAC 262137 29 100.0 32 ............................. TGCCGGGGCAGTCGTGCCGATTAAGCGGGCTG 262076 29 96.6 32 ........T.................... AAATGTAATACCCGCCCCATACAGTGGCCTCT 262015 29 100.0 32 ............................. ATAGGCCGTGTGGAATGATCTCAGTTCTGCCA 261954 29 100.0 32 ............................. TCCCCTGACGCAGTGGAGTCGTTTCCTGTTGC 261893 29 96.6 32 ............T................ TGCGCGGTGCTGTCTACGAAATCAATATCCGA 261832 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCTCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //