Array 1 543728-543297 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBUO01000001.1 Phocaeicola dorei strain P8wE9 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 543727 33 100.0 32 ................................. CAAGCCATCTAGAAGGCATTAGAACGGGGATA 543662 33 100.0 34 ................................. TCCTCTGATTTACCGGCACCGGCAGTGCGTATAT 543595 33 97.0 33 ................................T TCTTTTCCCCAACCGGAGCGTCAGGTGCTAACA 543529 33 100.0 32 ................................. CAAGTCCCCTTATATCAAGCTCAGCACCTATT 543464 33 97.0 34 ................................C TTGAATGGAATGAACTTATGAACGTGTATAATGC 543397 33 100.0 33 ................................. TCAATGGCCCAGTATTCGGCAATATCGAAGATG 543331 33 81.8 0 ..........GT......A.A.......G.G.. | AA [543313] ========== ====== ====== ====== ================================= ================================== ================== 7 33 96.5 33 GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTTTGGATTATGGACAGAGGGTGCAGAACTCAGTTTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTTTAAAAGGAAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTAGAAGTAATAGGTGTTGAAACGGCTTATAAAGTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAACTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTCGGTCAAGTTTATGGAAGAACTGTAAGCATTCGGCCTCTTATGTATTTCTCTCCAGGCTTTTGATTTTGTTATGACTGGAAAAAACACGTACAAGCCCGAATGCTTATCTTTTGTCTGTTTTCTTTTGTTGTTTCACCTAGGTGACAATGCATTGGCACCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGATTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTGCACGATAAGGCCTTGTAACTGAAGTAAATGGATGAACCATCATGTAGGACACATCAAGAAGGAAAATCTATGAGCCTTCAGAAACAATGGTAAAAAGCCACATACATACCAGTTAAGGGGAATTACGGATCCTTTTACACCGCAAACCGTTGAAAATAAATGGTTTGCGGTGATAGAAACAAAAAAAGAACAGATGTCTTTTTAATACGCTATCTTATCCAATATCCCGTTCAAGTGTGCAATAGCCACTCC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3614297-3611562 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBUO01000001.1 Phocaeicola dorei strain P8wE9 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3614296 47 97.9 30 ...A........................................... GCAGCATGGGTAGAATAGTCTTCCATCTGA 3614219 47 100.0 30 ............................................... GTAGGGCTATTCCACTCAATCAACAAGTAT 3614142 47 100.0 30 ............................................... GTAGGGCTATTCCACTCAATCAACAAGTAT 3614065 47 100.0 30 ............................................... TAGACAGGCAAGATTTCTCCAATTTTAGCC 3613988 47 100.0 30 ............................................... ATTTAGTTGAAGCTATGAAGAGATTTAAGG 3613911 47 100.0 30 ............................................... GCAGCATGGGTAGAATAGTCTTCCATCTGA 3613834 47 100.0 30 ............................................... CGGATTGGCGGGATCATATAACAATAAGAC 3613757 47 100.0 30 ............................................... ATTAATAAAATGAGCAAAGCAACCGATTTT 3613680 47 100.0 29 ............................................... TCAAAAACGAATAAAACATCCGCACCACA 3613604 47 100.0 30 ............................................... CGGATTGGCGGGATCATATAACAATAAGAC 3613527 47 100.0 30 ............................................... ATTAATAAAATGAGCAAAGCAACCGATTTT 3613450 47 100.0 29 ............................................... TCAAAAACGAATAAAACATCCGCACCACA 3613374 47 100.0 29 ............................................... TCAAAAACGAATAAAACATCCGCACCACA 3613298 47 100.0 30 ............................................... CGCATCATAGAATGAAAATATGATTTTGGA 3613221 47 100.0 30 ............................................... CCATATAGCGAATGATGGAGATAACCAACG 3613144 47 100.0 29 ............................................... CGAAAGTAAATAACACAATCTCATTCCTG 3613068 47 100.0 29 ............................................... GATAAAATGCAGTATTTTTACGGTGAATA 3612992 47 100.0 29 ............................................... AATTTTCCAAATAGAACTCTTAGAAGCCA 3612916 47 100.0 30 ............................................... AATAGACGGGTTCAAGCGTAATGCGAAAGG 3612839 47 100.0 30 ............................................... CCGTTTTTGTTTGTAAATTTGTATCGTTTA 3612762 47 100.0 30 ............................................... TGGCGACCTCTTCCGAGTTTGAGAATAGTA 3612685 47 100.0 30 ............................................... GGTTCTTCTAATGGTAATTGGTCAGTTGTT 3612608 47 100.0 30 ............................................... TCACCTTCATCGAAAGTTTCGCCCTTTTCA 3612531 47 100.0 30 ............................................... AGAGTAACCCGGAAAGTTATCAGTAACACT 3612454 47 100.0 30 ............................................... AGAGTAACCCGGAAAGTTATCAGTAACACT 3612377 47 100.0 30 ............................................... AATACAAGGGTAATAAGTATAAAGTATATC 3612300 47 100.0 30 ............................................... AAAAATCCAATAGACGCTCTTTGTCGGGGT 3612223 47 100.0 30 ............................................... CGACCAGTAGTTTTTTCTTTAACTGAAATA 3612146 47 100.0 30 ............................................... CGACCAGTAGTTTTTTCTTTGACTGAAACA 3612069 47 100.0 30 ............................................... CAATCACGTTGAATTTGAGCTTGTTCAGCA 3611992 47 100.0 30 ............................................... TCACCCTCCTCAAAAACCTCGCCTTTCTCA 3611915 47 100.0 30 ............................................... GTCGGACCATCCTTTAAAGCCTCGCAACCT 3611838 47 100.0 30 ............................................... CAAACGCCTGTGGGCAGGTGATGAAGAACG 3611761 47 100.0 30 ............................................... CAAACGCCTGTGGGCAGGTGATGAAGAACG 3611684 47 100.0 29 ............................................... CGCAAATATAATAAGTAATTACGACTTGT 3611608 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 36 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAACTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : AGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //