Array 1 195297-194838 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSZL01000001.1 Salmonella enterica subsp. enterica strain 185/12 NODE_1_length_703959_cov_53.1941_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 195296 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC C [195282] 195233 29 100.0 32 ............................. ATTCTGGCTGTTATCGGCGGCACTCCTGATCA 195172 29 100.0 32 ............................. TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 195111 29 100.0 32 ............................. TTACTGAAACGGATAAAAAATAATCAGGGGGG 195050 29 100.0 32 ............................. GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT 194989 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 194928 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 194867 29 96.6 0 ............T................ | A [194840] ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGTGCCGGATGGCGCCATTCTGATTTTCTCCGCTCATGGGGTTTCCCAGGCGGTGCGTAACGAGGCGAAAAGCCGCGATCTTACCGTTTTTGACGCCACCTGCCCGCTGGTGACGAAAGTCCATATGGAAGTGGCGCGCGCCAGCCGTCGCGGTGAGGAATCTATTCTCATCGGCCACGCCGGGCACCCGGAAGTGGAAGGCACCATGGGCCAGTACAGCAACCCGGAAGGGGGGATGTACCTGGTGGAGTCGCCAGAGGACGTCTGGACGCTGAATGTCAAAAATGAAGGCAAGCTCTCCTTCATGACGCAAACCACGCTTTCCGTGGACGATACGTCCGATGTGATTGATGCGCTGCGTAAACGCTTTCCGAAAATCGTCGGCCCGCGCAAAGACGATATTTGCTATGCCACAACTAATCGTCAGGAAGCGGTGCGGGCGCTTGCGGACCAGCGGGGATAAACCGCCCAGTCAGGGGCGCGATATTGCCGCCGTGTT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 607-90 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSZL01000011.1 Salmonella enterica subsp. enterica strain 185/12 NODE_11_length_155241_cov_58.5541_ID_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 606 29 100.0 32 ............................. TTGGCAGCGTTAACAATCCAACCCCTGAGAAC 545 29 100.0 32 ............................. CCTGTGACCTGTTCGATGAAGTTGTCGCGCAG 484 29 100.0 32 ............................. CAGGCCGCGCAGTGGAAAATGAGCCCGTTTGC 423 29 100.0 32 ............................. ATTGATCCAATTAACGTAGCTGCAATGTTTGT 362 29 100.0 32 ............................. GCCGCGCATGACATCGAAAAAATGTGGGAAAA 301 29 100.0 32 ............................. GCGTCCGTGTGATCACCGGGTGGGTGATGAAC 240 29 100.0 32 ............................. TTCAGCGAGCCATAAAACCGCAGTTTGTTTGC 179 29 100.0 32 ............................. TCACTTCAATAAGTCCTGGCGGTAGCTCGGGG 118 29 79.3 0 ....................CCACC...T | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTTTAGCGCCCGTCTGAGCTGCACAAAGCCAATAAATGGTTGTCTGGGGCGGTTCTCGTAAAATTCCATACCGACCTCCGCATAGAACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //