Array 1 174315-173899 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFPJ01000009.1 Clostridium sporogenes strain AM370 AM370_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 174314 29 100.0 37 ............................. TGTTTTTATCTCCGCTTTTTATATTTAATTAGTTATG 174248 29 93.1 30 .................G..........A TTGCAAAAACCTCCTATTTGTATAGCTTAA 174189 29 96.6 36 ........T.................... CTATAAATTTCAGCATGAAAGTCGCAGCAATTATAA 174124 29 96.6 37 ........T.................... CTTAATGAGGAGGTTGTTTAATGAAGAAAAAAATAAG 174058 29 96.6 36 ................G............ AGATTATAAGTTTTACACAACTATGTACTGTTATTG 173993 29 100.0 37 ............................. TACCGAAAAACAAAAAAAGATATAAGATTTTTCATAA 173927 29 82.8 0 ...........T...GG..A......G.. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 95.1 36 TTTAACTTCTACATTATATGTATTTAAAC # Left flank : CGTAAGCTGGGATATCTATATATTACTAGATGAAAATAGTGTTGATAAAAAAATTCTAAATAAATTAAAAGATTATTTGTTAAATAAAAAATGTCACTTTATTCCTTATCTTGGCAAAAATGATCATGCTGCTGATATCACAAATGTTGAACTTATTAACTTAAAATCAATACAAGCACATGAAAAATTAATAAGAATACAAAGTTTATTTTTAACGAATAATTTTAATATTACAGGAGAAAAACATAATCCTAATGAGAGATTAATAATATTAAAAGAAATGTTGCCAACTGAATTAGATGAATTCGATAACTCTTACAAATTTAGCAATTTATCTTTTACTAATCTCATTGTTCAACCAAATACTAGTAAAACATTAATTTATCAGGATTCACTAAGTAATTTATATTTTTTTTAGGAATTTAAAAGTCATATAATGAAAGCATGTTATAATAATTATATAAACATTTTATTATTTACAAATGGCTTATTTTCATTGG # Right flank : AAACTATAAATAGAAAAAGAGAAGGTGCAAAAATAAAGAAAATTTTACCTGATTTATATATAAATGAGTCCTCAGATGGGTTAATCTTAATAGATAAAATTTCAAAAATCCATTATGAACTAGCAACTGATACCCCTTGTGATAGAAATGATTTAACAGGCTTAAATACCGATTATCAAAACGGTAACTTAAATATACTTATGGAGATTAAGGAAAATTTATCTTTTACTCATATAGTTAGAGATTCACATGGATTTATTTTTGCAGTAGAAATAGCAGATTTATAAAAAAAAGAATACATTTAACTTTTATATGAAATATATTTAAAGATAGTTGTTTTCATTGTAAGCTCTAGTGGCTTTATATGTTTAACTTATACATTAGATGTATTTAAACGTTGTAAAATATGTAGGTGAAGCTAAGGAGTGTAAGTTTAACTTCTACATTGGATGTATTTAAACTCATCGTGCACTTTTCTTATTAGACAAAATTTATCGTTT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAACTTCTACATTATATGTATTTAAAC # Alternate repeat : TTTAACTTTTACATTATATGTATTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 223946-223719 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFPJ01000009.1 Clostridium sporogenes strain AM370 AM370_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 223945 30 100.0 35 .............................. TAATAATAGTCCAATTTCTATAACTGGAATACTCA 223880 30 96.7 37 ............C................. TAACAACTAAAAAAAATATTGAAAGGACTTCCACTTG 223813 30 100.0 35 .............................. AATCGGAAGTTTTGCTTTAGCAGTCTTACTATCGG 223748 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 98.3 36 ATTTACATTCCATATAGTTAAGATAAAACT # Left flank : TTATATTCATTTAAGGCGCCTCCTTTATACTTAATTTGTTCCTTTTTACTAATATAATTTAAAGAATTAGTGAATACAATAATACTTTGGCTTTATTTATATTAGACATATAGTAATATTTCTCAAAATAAAAAAACACGATATATTCTTTTAATATACCGTGTTAAAAAAAATTATTATTAATCTAAATTTAATTTGCACAATCTTTTTTATATTCAAAATAAAAATAGCTCAGACAAGCTAGAGCATCTAAAATGTTGTTTGTTATGACATATTTAAGTAAAATTTAATAAATCAACCCAAATAATAGAAAGGGGGAACTACAGTTTGCTAATTAATAAAGATATAATAAAAATGTTCTTATTTGTTTTTATAGTATTGTATATAATTTTTAGAGATGCAAAATCTATATTAAAAATACTAAGTACAGCTGCAACTGCTTATAGTATAGTTATATTATTACTGCAATAGTATATTAATTCTATAATTATCCATCATCA # Right flank : CCTAATTTTATAAATCTTTTAACCTACTGGTATAAGCTAAATTACACAGCATAAACATATAACTAATTTGCCTTATTCTGCAGTAAATCTCCAGTAGTATTTTTGGGTAATATATAGAACTTACTCAAATGTCATTGATTTCAAGGTTTCAAATACATAAGGTCCAAAATAGCTTCACTGCAAATTTATTAATTAAAATTAAAATATGAGTATATAACCGCATTAATCATGGAATGTTCGGATGGTAACACAATATCCGAAATTAACCCTTGCCGAGTGGAAATATCCCTCAGCCTTAGGACGTTAAATCGCCCTGTTCTTATTATCTTAACTGAAGTAATTATACCATGTTTTTGTTATTTTTGTAATACTCACTTTCTTCTTTTTTTGATATATAGTTATAACTCATAGCTATATTTCTAGCTGCATTGTAATCAGCATTCATCTTATGCCAACATCTCTTACAAACAAATGTATCTTGTTCAACTCTTTGACCTTCT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCATATAGTTAAGATAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //