Array 1 144098-144727 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUYF01000003.1 Dolosigranulum pigrum strain 15S00348 unitig_0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 144098 36 100.0 30 .................................... AAATCATCTATCTTTTCTTGTTGTTCAGCA 144164 36 100.0 30 .................................... GAATTAAGAGAGCGTATGATTGCGAAAGTC 144230 36 100.0 30 .................................... TGCAAGGAATAACAACATATCTGACCATTC 144296 36 100.0 30 .................................... AGAAAATGATGAATCTTTATAAGTATTCGT 144362 36 100.0 30 .................................... TGTTTTGACTCCTCCGCTTTGGAACGTGAA 144428 36 100.0 30 .................................... CGAGAAATCCTTTCTTACATCTGCACCATA 144494 36 100.0 30 .................................... CCAAAGAATAAAGACTTTAAATTCTTAGAG 144560 36 100.0 30 .................................... TTGCTTACGTGAACGTAATCGTTAGTTACC 144626 36 100.0 30 .................................... ATGAGCAAGGCAACCTGCCACCGTCATCAT 144692 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC # Left flank : AAGTGATTTGGCTTGTCATCAGATATCCAGAAACTTATTTGGAGATAAATGATTATTTATCTTTTATTGAAAAAGTAAGAGTAATTGCTCAGGAAACAAAATTACTAAAAATGATAGTAATCCATTATAAACAATTAGATCCAAATATATACTCAGATGAGTTTATTGATAAGACAATTATCGCAACAAATCGATTTGAGCAATTACCTGAGATAGAGTATTTTAGAGATAATGTTCAAAAGTATTACCCAGATGAAATGACAGATACCGATAATATACTTGCCCAACGCTTTTATAGAATATCGCATCTCATTGGTGAGACAGAAATTTATAAAAATTCTACTATTTTCACAAAAGATATGGTATTATTAAAGGTGTTAGGGGACATATTAGAAATGCCGGTTACATTTGAGACGTCAGATGAAACGCTAAGTGCGTTAGAAACAGCATTTCTACTAGAGTAATATCAATCTCGAAAAAAATCATTTGGTTAATTTGAG # Right flank : CTTTTCTACCTCTAGCATCCACTCCTCGATAGTTTCCAAATTCGCTCCGATCAATTTCCGCCTTATGGTAGCTTGTTTTTAGTTGGACGGTGATTTCTTTTTCCGGTAAAATAAAGTTACCTTAAAAGCTTAGAGGAGTTATGATATGTTAGTTATGACTAATGAGAGTTTATATGAGATTAAGACGGTTTCGGAGCCGGTTGTTCATCAGGATCAGGTGTTTTTTGTTGAGACGTTGGTGGATGAAGAAGAGAATAATTATCAGAAAACAATTTACAGTGTGAATCAGAAGACGGGGGAGAAGGTGCATTGGGGTGATGGTGGCCAGAGCAATACCTCGTTGGCGCTGTCGCCGAATGCCAAGTGGTTGTCTTATCTGTCGACTAATACGGACAATAATAAGCCGCAATTGTTCATTATTCCGCTGTCAGGGGGTTCAGCGGTCCAATTAACGGAAGAAGAACAAGGGGTGAGCACGTATAAGTGGACGCAGAACTCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCCTATCACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 324080-325370 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUYF01000003.1 Dolosigranulum pigrum strain 15S00348 unitig_0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 324080 36 100.0 30 .................................... CTACTTCTTCCACGTACTGGGCATTGGATT 324146 36 100.0 30 .................................... GTTACACTACCCAAACATCACTATCAAATG 324212 36 100.0 30 .................................... AACCATATTGCGAACATGTTCCGTGCGGAA 324278 36 100.0 30 .................................... CTTTAGATGGGGATTATTTAGGAGATGAAT 324344 36 100.0 30 .................................... AGACGTATAACTTAGACCCCATTACGCATG 324410 36 100.0 30 .................................... CTTCTTTATTGAGGTTCATTGCTACGGGTA 324476 36 100.0 30 .................................... CAACCAAGACTACTGTTAGTGTGGAGTTTA 324542 36 100.0 30 .................................... AAATTGACCCGCTCGACGATTCAATCTGCA 324608 36 100.0 30 .................................... TGCGCTGTGTGGAGATTATTCAGCGTATAC 324674 36 100.0 30 .................................... TATTTATCCCTCAACAACTGAACTGAAACA 324740 36 100.0 30 .................................... GAAAGAGGTGATGGATGAGTTTGAGCTGTT 324806 36 100.0 30 .................................... TATTTACTAAACTCAAAACAATAAAAAAAG 324872 36 100.0 30 .................................... CAAATTCATCTAATATTACAGAGAAGGTGT 324938 36 100.0 30 .................................... CTTGCCCAACTTTATCTCCACCTAGTCGCA 325004 36 100.0 30 .................................... TTTCTTTAGTTGTAAGAGAAGATAGCTTTT 325070 36 100.0 30 .................................... GTCACCACATCATCATACGGTTTGTCTGGT 325136 36 100.0 30 .................................... ATTATATGAATCAGGCAATAAGGATGTTAT 325202 36 100.0 30 .................................... TGGGTAACGGAAGAGGGGCTGCCGAAGATT 325268 36 100.0 31 .................................... GCACCTATTCCAGCGACTACTAAGCCGATGG 325335 36 91.7 0 ..............................T...TT | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.6 30 GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Left flank : TTGACTAATCAAATTACTGAACTGATTAATGCAGAGGTACTGAATCATGAATTGGATTTAGAACTTGATGAAATTACAATCCAAGAGGTTCTTATTGCTCTAGGGGTAAAAATTGAAGTTGATACAGATACACTATTTGAAAAGGTGTTGGAAATTTTTCAAGTCTTTAAATATTTGCGAAATAAAAAGTTACTAATACTGGTTAATGTCGCTTCATACTTTACAACCGAAGAGCTTAATGAAATGGCACAGTTTGTCTCATTGTTACAGATGAATGTGCTGATGATCGAACCAAAACCGACTGATTCTGAGATAACACAATATATCCTGGATTCGGACTTCTTTTTGACCATCAAACATGGTAAAATGAAGTAGAAGATAAACTAGAAAAATAGGAGTCGTTCAAAGCTGAAGTTTTGCATGGACGAATAGCGCGATTACGAAATTTTGTGCAAATTTCTTTAAAAAAATGATTTTTTAGAAAAGAAATACTGTGCGAG # Right flank : TGATTGGTCAGATAACTTATGAGATTTAGAGTTATAGTGTATTGATTTTTGATGTAATAATTATTAATGAAACATATAATCCTGTTTAATCTTCTAGTCAAACTAGCTAATTAAATAGGATTTTTGTTTATTCAGGAGACAAGCTACTTGTGAAGTATTTCCCGTGACTATTAGTCGAAATTGTGGTGGGAATATGCGATAATGTAGAGCAAGGAGTGATGGCTGTGAGTAAGGAATTGTTAGTATTGATCGGTTACGAAGAGGATGTATTAGAGACGTTTCGAGAGATGGCTAGTGAGTATCAGTTGGTGAGTGAGTTTGAGGAAGCTGATTTTTCGAAGGTTGAGATCGTACTGGGTTGGGAGGAGCGGTTAGTTGATGTGCTTGAGTCTGGTGAACATCAATTAAAGTGGATTCAATTGCCGACAGCTGGCGTGGATAAGTTGCCACTTGATTTACTAGCGCAAGAAGGAGTGCGGTTGACTTCAGCAAGCGGGATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //