Array 1 68986-72564 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNPQ01000011.1 Nitrosomonas sp. Nm58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 68986 29 100.0 32 ............................. CTGTTTGTGTTTGTAACTCAGATACAGCGGCA 69047 29 100.0 32 ............................. GTTATAATGCAAGTAAGGAAGCCATAGAGTTG 69108 29 100.0 32 ............................. AGTAGGTATGATAGAGTTTCATTCACTGCATA 69169 29 100.0 32 ............................. GAAATCACCCGCTGGTGTTCCGATTACACCGA 69230 29 100.0 32 ............................. TAGCAGCAGCCTTAGACGCAAAAGAAAAATAC 69291 29 100.0 32 ............................. ATTGGTTGGATGAAGTAGAGATTAGCGAAGTA 69352 29 100.0 32 ............................. TCTGGCCTCAACCTCCGCCAATCTTGTCTGTA 69413 29 100.0 32 ............................. AAGAGAAGATTATTAGCTGGTATGGCCCTGGC 69474 29 100.0 32 ............................. CCGCCGTCCTGCAAAGTGACGGTACGCAGTAA 69535 29 100.0 33 ............................. TAGATTTTGATGGTGAAACATATTACATACGGA 69597 29 100.0 32 ............................. CCGAAATTAATAATGGAACGAGGTGATCCGAT 69658 29 100.0 33 ............................. TACCTTTTGTATTTGTTCCTTAGTTAAATCTGC 69720 29 100.0 33 ............................. TACGCTAAAACTAGCAGCGCCATTTGCTGCTAA 69782 29 100.0 32 ............................. ACCGAATTCCCGCTCAGCAGAACTTTCTGGGA 69843 29 100.0 32 ............................. GATGAGCAGAAATGGCTGAAACAGGAAATACA 69904 29 100.0 32 ............................. CATACCAGTGGCATATTAACGGGCGGGCGGGC 69965 29 100.0 32 ............................. CGAGCCATTCCCACAACCCTTTAGGAAAAAAA 70026 29 100.0 32 ............................. GCTTTTCGAGGCCGCTTCCAGTTCTTTGACCT 70087 29 100.0 33 ............................. CGAGTAAATATTGCCATTGCCAACGCCCAAGCT 70149 29 100.0 32 ............................. CCTTTCATGCGCTCGGAATCGATTTTGGCCAA 70210 29 100.0 32 ............................. GTCTGTCCCGTGCGCAACGCCACATGAAAAGC 70271 29 100.0 32 ............................. GAAACAACATGGGATGGGAGCAAGCTTACGGC 70332 29 100.0 32 ............................. TCAATGTTCACATCATCAGCGCCGAGTCTGAG 70393 29 100.0 33 ............................. ACGCTTTTTCATGTATTCCGCTGCGGCTATAAC 70455 29 100.0 33 ............................. GAGGTGACCGGAGGTGATAACACTGGCGACACT 70517 29 100.0 32 ............................. ACGTGCTGCCTAGCCGTTCAGAGTCGGTGAAA 70578 29 100.0 32 ............................. CTATGGAGCACCATCTTAATGTAATGGAATGG 70639 29 100.0 32 ............................. GCGGCGATGAGTACTTCGTTGCACAAGGCATG 70700 29 100.0 32 ............................. TCATTGTCAGCCGGTCAATTCGTCGATGCTAC 70761 29 100.0 33 ............................. CATGGATCTGGGATTTGGATAGAATTTTCCTGA 70823 29 100.0 32 ............................. CAATGTTCGAAGTGGTTGAAGAGCTGAGTGAG 70884 29 100.0 32 ............................. GGAATATTACGAGAGATGCTACGGGCCATTAC 70945 29 100.0 32 ............................. GCGGTAGAAGTAGTTTATGGAGATAGAGAGGG 71006 29 100.0 32 ............................. TATTTAGGCAATCTATCTTCAAACAGCCTGGA 71067 29 100.0 32 ............................. TTGACGTTTGCCAGATAAAGCTACGGCATACT 71128 29 100.0 32 ............................. TTGGATGAGGCTTTAGATGACTAGCAGAAAAT 71189 29 100.0 32 ............................. CGGCTTTGACTTTTCGCATGGTTTACCGAGGA 71250 29 100.0 32 ............................. ACCGGTTTTATTTAATTGTCTAGCAACGTAAT 71311 29 100.0 32 ............................. GATCATGCTGGATGATATGCTGCGAATCGGTA 71372 29 100.0 33 ............................. GCCACACAGCCTCACCAAAGGTGGAAAAGGTGC 71434 29 100.0 32 ............................. TTGTTTGCAGCAAAACCAGCAGGAGGTGGATA 71495 29 100.0 32 ............................. CTTCCAGCGCACGGGTCAGTTCCGGTGTGGTC 71556 29 100.0 33 ............................. CGGTCTACGATATGCTGATCCAGTCGGGTATGC 71618 29 100.0 32 ............................. CTCACTTGACGAGGGTATCCAAGTGATACGCC 71679 29 96.6 32 ............................C TTTTTCAACGGGTCTACCTGTCACATAAATAA 71740 29 100.0 33 ............................. GATGTGTTTTTTTATCAGCGTCTTTTATTTCAC 71802 29 100.0 32 ............................. CAGGGAGAGGGCGAAGGAAAGAACATGGGATA 71863 29 100.0 32 ............................. GCAGAGTCGGTCGCCGCGACCAACCTGAAATC 71924 29 100.0 32 ............................. GATGGGCCGGTACCGCAGTACACCTACCTGAG 71985 29 100.0 32 ............................. TTTGCGAGCGGTACAGGCTGACCATTTACTAA 72046 29 100.0 32 ............................. CTATGGCGTATTCTCTAAATAAATATCCAGCA 72107 29 100.0 32 ............................. AGGAGTACAGCAATCAAATTGAGGCTTATCTA 72168 29 89.7 32 ....................AT......A TAAACATTTTCGCTTTGAGACAGGTTTCTAAG 72229 29 100.0 32 ............................. GATGCCCTCGCCCTGATTGGCTACACCTAGAC 72290 29 100.0 33 ............................. CGCGAAATCCAAGCTGGTCGCTGTGTTGAAATG 72352 29 100.0 32 ............................. GGATGGACGGATTGACCGGATATGAATACGCT 72413 29 100.0 32 ............................. CCGGTGAGACCGCATTTACTACGCTGCAACGC 72474 29 100.0 32 ............................. CAGGCGCTTCTTGCCAGGGAGACTCAGCGTCT 72535 28 93.1 0 .......................-...A. | C,T [72560,72562] ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.7 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CCGAGATGTATTTCGTGAAAGCAAATTGCTGGAAAGAATCATTCCTGGAATTGAGGAAATGCTTTCTGCTGGTGAAATTATCCCACCTGCTGCACCAGATAACGCTGTGCAGCCAGCCATACCAAATCCTGAGAGTCTAGGCGATGCTGGTCATCGTGCTTGAAAACGCTCCACCTCGGTTGCGTGGACGACTGGCTATTTGGTTGCTGGAGATTCGTGCAGGTGTTTACGTCGGTAATTATTCAGCTAAAGTGCGCGACTATATTTGGAGCCAAGTTGAAAAAGGAATTGAAGATGGTAACGCTGTGATGGCTTGGCGTACCAATAATGAAGCTGGCTTTGATTTCGTGACATTGGGTACTAATCGAAGAATACCGAGTGAAATAGACGGTGCGAAGCTGGTTTCTTTTTTACCTGAAGAAACAGGAGAAGCTCCTTAAAAATTTGGTAGAATTCTGCCTTGCTTTTTATCGCTGAAAAATCAGCGAGATGGGAGAAGT # Right flank : GGATTGAGACTCATTGTTACCTGGGCGTTCTGCCTATGGATTAAAAAAAGTGAAGTTGAAAATAGTAAGGACGGAACGTTTGCCACGTATGGTTTTAGCCACAGCAACCGTCCTCGAATTTTAGGGTTTAGACTGACTTTTCTGAAACGCAAGCAGCCTGGCGGCCACAATTAAAACAGTTGCAAATAATTTGTAGCAGACTGCTACAATATGGTGGTTTTGTAATGATATGTGAGGCATGACTATGGCAAAATCGGCATCCCCCATTCGGTTGCAAGAAGAGCTGATGAAAGCAGCAGAGTTAACTGCTGACCGTTTTCATCGCAGCACCGCCGAACAGATAGAGTTTTGGGCGGAGCTCGGGCGTTCTGTGGCTGATACGCTTGATCCTGATGTGATGTTATCCGTCAAGTCGGGGCTTTCAAGAATAAAAGTGGAACCCGTCTATGGCATTCCAGTCGATCCGGCTGAAGTTTTTAAAACACTTGAGAACGACCGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 73942-74689 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNPQ01000011.1 Nitrosomonas sp. Nm58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 73942 28 100.0 32 ............................ TGTGCAGGATGTAATCGACGCGGCGAATGCTC 74002 28 100.0 32 ............................ GACTGATCTAATTTAGATGGAGAGCTCGTAAG 74062 28 100.0 32 ............................ GCCAACCAGAAAGGCGGGCACGACAAATCGAC 74122 28 100.0 32 ............................ ATGCCCGGAAAAGCCGAGAGTGCCAGCCAGTC 74182 28 100.0 32 ............................ GGTGGGAACTGCGGTATCGGTCGGCTGAGAGT 74242 28 100.0 32 ............................ ATGGATGGAAAAGGTAGGGGTGTTGAGTTTGT 74302 28 100.0 32 ............................ CGAAACCCAATGCCAGCGCGGGTCAATAATCG 74362 28 100.0 32 ............................ ATTGTAGACAAGCACATACATATGATGAATGA 74422 28 100.0 32 ............................ TCGTCAGAAAGTCGGATTCGATCGGAGGTGCT 74482 28 100.0 32 ............................ AGAAAATCAACATACCAGCCTCGTAGAATACG 74542 28 100.0 32 ............................ GTCTGCTGGCAGTCGTGATCCCGGCGAAGATA 74602 28 100.0 32 ............................ TTGCATAGTACCTTACGAAGATTTACCGCAAG 74662 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTTGAAACTGTTTTTTCTCATCACTCTAAAATCGATTTTGTTGCCAATGCAAAAGTGCTGGGTTATGAAATTGTGCTTGTCTTTATTCACCTTGAACAGACACAACTCAACCTCGCGCGTATTGCGCAGCGGATGAGCGAAGGCGGCCACGCTGTGCCGGATGAAAAAGTTAAGGCGCGAATACCCAGAGTATTGCAATTGGTTAAGCAGGTTTTACCGCTATGTGATCAAGCATACGTCCTGGACAACTCTCGGGCGGATAGCCCGTTTCAGCAAATAGCGGTGATTCGCAACGGATGTCTTGAGTTAAAGCGAGTATCGATTCCAGAATGGTGTGAGGAATTGCTGTCAGATTATCTGTGATTGTTATACCTATTTTTTTGTTCTTTAATAATTTACAAAGAATCAGTTACTTATTAATTACTGAAAAATTATTAGGTATTTTGTTCATTTCACATTAAACGATTGTTGTTTATAGTTTTTTGAGTGTTATGCTCCA # Right flank : ATGTGGTAATAAGCGCACTGACGTGGTTCAATAGAATTGACCAACCCAGTTAAGGGATAATTTATCTTAACTGGAGATTAAGGAATGAATACGAGAAAGAAATATTCGAAGGAATTTAAGTTGGATGCAATCAGTTTGGTACTTGATCAGGGATATACGAGAGTAGAAGCTGCCAGGAACCTGGATATTAATGTCAAGATGTTGTGTCGTTGGATCAATGAGTATCAGACTGATGATGGGCAAGCTTTCCGTGGTAATGGCAAACTGACATTGGAGCAGGAAGAAATTCACCGACTAAAAGAAGAAAACAGGCGATTGAAGATGGAGAAAGAAATATTAAAAAAGGCAGCGGTCTTCTTTGCCAAAGAAACGAGATGAAGTACTCGTTTATTGCCCTTCATAAGAAGACCTGGCCCGTTGATCCGATGTGTCAACTATTGGGCGTAACTCGTAATGGTTTTTATCGTTACCAGAATGAAAGCCGTGAAAACCGAGATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //