Array 1 853390-852025 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPN01000001.1 Klugiella xanthotipulae strain DSM 18031 Ga0197545_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 853389 28 100.0 33 ............................ GGAATAGCAGGCGGTTGCCGTTGGCAAGCTCGA 853328 28 100.0 33 ............................ CACGGTCCGCTGCTGCTGGAATTTCGCGATGGT 853267 28 100.0 33 ............................ TCTTCTCGCCCGCCGGTAAATGGGTTGCGGCAG 853206 28 100.0 33 ............................ GTATGGCCTCCGCTATCAGCAGCTCTTTTAGTG 853145 28 100.0 33 ............................ CTGGCCGGGGTTTTCCGGCTTGGTGAATGGGGG 853084 28 100.0 34 ............................ GGGCGGGTTCAACCTCTGGCTCCCGGGGGTGACG 853022 28 100.0 33 ............................ CATCTGACGCACCCCAAGGAAACAGAGCAGGAC 852961 28 100.0 33 ............................ CGTAACCATCACCAACCCCGGTGACCCCACCGA 852900 28 100.0 33 ............................ CGACGTTTCCGCCGTCGGCTTACCGGTCACCGG 852839 28 100.0 33 ............................ GAATCTGGCGGTGTTGTAGCGGCTGATCCACCT 852778 28 100.0 33 ............................ CAGTCCACAAAGGTGTTCCGGGCACCCGTGAGG 852717 28 100.0 33 ............................ GAGCCGCCCGTCCAGCTCAAGCGCCGTTTGCGA 852656 28 100.0 33 ............................ GCAAGGCAGCCACCACGGCAAACCTTCACCTAC 852595 28 100.0 33 ............................ CTGTGCGCCAGACGATGCCCAGCCCAGCACCCC 852534 28 100.0 33 ............................ CCGATTCAGACCGCGATGCCTTCAGTGCGTCCA 852473 28 100.0 33 ............................ CGTGTCGGGTCGAGTGGGGATGGTGCGCGTACT 852412 28 100.0 33 ............................ CGAGCACCCCAGCCCTAAGCACTTGCCCGCAGT 852351 28 100.0 33 ............................ GCCGTGGCAGATTCCGGTGCCGATCCTACGTCG 852290 28 100.0 33 ............................ GTGGCTGATGCCATTCAGAAGATCGGGTCGATG 852229 28 100.0 27 ............................ CGGCTACGGCTACGGCAACGGCGACGG 852174 28 100.0 33 ............................ CTCGAACCAAAAGCTGACTACGTGGACACTTTC 852113 28 100.0 33 ............................ TCGGGCTGAGCAGCTGATCGGACTGGCAGATGC 852052 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 23 28 100.0 33 ATCCGCTCCGCGTACGCGGAGGTAGACC # Left flank : AGGCAGCTCTGTTACGAATCACCCCATCGAGTCGCGATCAAGCTGCGGAGGCTGCGGTCAGTGCGCTCTTTTCCCCCAACGCCGGATTTGCGTATGAGCAATGTGACGGCGGCATGGACCGTTTCGAAACGGTGAACCCGGCCGTAAACGGTTTGAGCCGTAAAGGTGGCCGTGCCAGCCGGAACGCTCTCGCTCCACTTGTCCTGGTCGGAATTGCCGCGTTTGGCAGCGGTTTCTTGAAGGGAGTTGGCATTTCGCAGAATGGAGGTGCCCTTCAGCTTCCGTTTCCCACAGTCCCTCTCCGCAAGGAGGAAATGCGAGCGCTGGTGTACCTCGGCAGCGGGCCCAAGAAGTGGGATTGGGATGGTAGCGGCTTGGAGTGGGTGTATGAAGTAAAACGAGAGCGCCCCACACAATATGATCATTACTGGAAGGGCGCGCTATACCGTCGGGGGAGTGATGGTAAATCGGCCAATCTCCCATAAGAATGCCTGATCAGT # Right flank : TAGCTCTGGTATACGCCTGGTTTGGCCTGGGTTTAGTTCCGTACTTTCAACAAGGATAGGAACACCATGGCAAACAAATATGAACCAGAATTCCGTGAACGCGCGCTGCGTATGCTCACCGAAGCGCTCCCCGAGCATACGAGCCTCAACGCAGCCAGCAACCAGGTCGGCAAGCTCCTCGGTGTCTCACCAGACACGCTGCGTATCTGGCATCGTCAAACGCTGATCGATACTGGCCAAAAACCCGGCGTGACCACTGATATGAACGAGGAGAACCGGCGACTGCGCCGCGAAGTCGCTGAACTCAAGAAAGCAAACGAAGTCTTGCGAGCTGCGAGCATATTTTTCGCCAAGGAACTCGACCCCCCACGAACGAAATGATCCAATTCATCGATACCTATCGTGATCGTTTCGGGGTTGAGTTCCTGTGCCGTGTGCTGGGCTCGGCAATTCGTGTTTCTGACGTCCCGAGGATATCGGGCAGCGAAACACAGACTCCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCTCCGCGTACGCGGAGGTAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 34929-32799 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPN01000004.1 Klugiella xanthotipulae strain DSM 18031 Ga0197545_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 34928 27 100.0 33 ........................... ATGACCAGCGCCCTACAAGAAGCCCTCGGCCTC 34868 27 100.0 33 ........................... TACGCAGTGGCCCGCCACCGGATGCGTAGGCAC 34808 27 100.0 33 ........................... CCGGGGGACAGTCATCAAGCCGCTCACCGGTCA 34748 27 100.0 33 ........................... GCCCCGACTGATCCTGATGGATGAATGGTCGTA 34688 27 100.0 33 ........................... GTACCCTTGTCAAGTCGGTGGAGCTACTCAGAA 34628 27 100.0 33 ........................... TAGTGGTCGCCGGGCTGGCGTGCCCGAGTAGCC 34568 27 100.0 33 ........................... CGTGCAATGTGAAGCTTACTGAGCTTCACAGCT 34508 27 100.0 33 ........................... GGTGCGGCCCGACCAAATCTGTCCCAGGTACTC 34448 27 100.0 33 ........................... CGCCACATCACGATCCACCTCGACCCCTTCGAG 34388 27 100.0 33 ........................... CAGAAATTTGACGGGCTGGCCCAGGCAGTTTTT 34328 27 100.0 33 ........................... CGCCCCGAGGGTGATCTGATCCATCCCGGCGTC 34268 27 100.0 33 ........................... TTTCAGCTTCGGGCATTGACGAGAAGGGGTTGC 34208 27 100.0 33 ........................... TCACCAAGGCTCTAAGAGCCGCCCCTGAAACCG 34148 27 100.0 33 ........................... GCCCATGCGGGTCTCGGCAGCGTCTCCACGCTC 34088 27 100.0 33 ........................... AAGCCGTCCATCAGGCTGCCGTCACAGCGCAGA 34028 27 100.0 34 ........................... GGCCTCACCCACCGCAGTCCTCAACGAATCGGAC 33967 27 100.0 33 ........................... TAAGGAGAACATCATGGCTGAAATTAGGACAGC 33907 27 100.0 33 ........................... GCTCTGGTGTGAAGTCGAGTGCCTTGAGGTCTT 33847 27 100.0 33 ........................... TCTCGCGGCGCGCCGCGACCCGCACGGCCGGGA 33787 27 100.0 33 ........................... CCCGAACGCCACCCGCTTGGGCTTGGTCTTCTT 33727 27 100.0 33 ........................... GGTAGCGTCCAGGTAGCGCTACCACCTCGGTGG 33667 27 100.0 33 ........................... CGTCGGCGCAGTCGGCACCGCCGCCTTCGCGGC 33607 27 100.0 33 ........................... CAGGAGCGTGGATACGATGCCCTGGTCGGTCTC 33547 27 100.0 34 ........................... CCTCGTTTCGGGCTTCCGTGACTCGGCGGCAGCC 33486 27 100.0 33 ........................... TACCACGGCAAGATTCAGCGGCATCTTCCACGA 33426 27 100.0 33 ........................... CGATTCACAGGCGACGACGAAATCACTGAAATT 33366 27 100.0 33 ........................... GAACCCGGCGCGGTCGCCCGTGTCGGCGGCCTC 33306 27 100.0 33 ........................... GCTCGTCGCCTTCGTCGGGGTCTAGCTCCTGCA 33246 27 100.0 34 ........................... TGGACGACGTATGCCCCCGCGGCCAGCGCATCGC 33185 27 100.0 33 ........................... GTCGACGCCCTGGTCGATGAGGTACTGGTAGGC 33125 27 100.0 33 ........................... TATCGTGAGCGACACGGTAGCCGACTCTGCCCA 33065 27 100.0 33 ........................... GTTTTACCGCGCACCCCGCGAAATCTTTATCAA 33005 27 100.0 33 ........................... TAGTCATGCCACATTTCGGTGGCGTAGGCTAGA 32945 27 100.0 33 ........................... TATGGGGCGGGTTTCCGCCCGACCGCCGGGGAA 32885 27 100.0 33 ........................... TGGGTTGGAAATGGGTTGCGAAGTTGGACTCCG 32825 27 92.6 0 ....................A.A.... | ========== ====== ====== ====== =========================== ================================== ================== 36 27 99.8 33 CTGCTCCCCGCGTAGCGGGGGTGATCC # Left flank : TGGACCAGAGGTCAACTCGGCGCACCCGGCACAACCAAAACAACGGGAATCGGCTTCAACGTCGTCGCCCTTACTTTTGTGGGCCTCCTGTTCCTGGGGGTCATCGGCCTCACAGTGTTCGGCTGATCTTTGTAACGGGCTACCCGGATAGCGCCCCACGAAGGTTCCTCACCCCGGAGACGAGAGGCGTCATCACAGCTTCGAATACGGTGCCCTTCCTGAACCTGAAAAAACGCGAGCCCTAGAGCGGCTGGGAGAACGCCCAGAAGCCCCGTGAGACCCTGGGGCGGGTGACACGAGCGTCAAAGAAGACTCTTCCCGCCCTGAACTGCGGGGGATGTGCGGGGTGAATCCACCCCCGAATAAGGACACGACCGCGGCGAGGGGCTCTAGGCTAACCACATAACCACAGATGATTGGCCATACAGTTGTTGAGGAGGGGCGCGCGCGAAGTGAATCTAAATCGGCTGTTGCGTCGGTAAAGTACCTGATCAGTTAGT # Right flank : AACTCGGGTCTGTGACAACACTCGGGTCTACGACAACACCCGAGTCTCAGCTCAGCTCGCCGACCAACGAAGCCTGGCTCCACGTTCGCCACTGTCAGCATCCTGGAGCCGTCTGGTTACTTCGGCAGGTCCCTCCTCAACTTCTGCACATGTCTTTCGGAGTGCACCGCCACAGGCTAGTGCCGAGGGTACTCAGTCTCCGAGACGTGCTCTCCCCCACTCAGTTTCTGGCCCGTCCTGGCCCTCGCCGAGTGACTCTCACATCGCCAGGTGCCCCATAAAGTCCTACGGAGTCGCCCCGTGCCAGCGCCACTCCCCGGGTGGCCTGTAGACGGTGCCTCCGGCCGCATCTCGATCAGTTCGCCACAGCGAGACTGCACCAGTCCGCGGCCGTCGGTCACATGCAGTGTCTGGCCGTTGGCGTGCCGGTGCCACGCGGTTCGGGCTCCCGGCGCAAAGCGCACCGTGTTCACGCGCAGCCGCGACGGCGGCTCGCTCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.00,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 45650-45202 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPN01000004.1 Klugiella xanthotipulae strain DSM 18031 Ga0197545_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45649 28 100.0 32 ............................ CGCCAGGCGGCGGGGCAGGGGGGGCGTGATGA 45589 28 96.4 32 ...........................T GACCACTCCTGTCTCTACTGTGGCGGCACCGG 45529 28 100.0 32 ............................ TTTTCCCGCTTCCCCGTACTCACGGCCTGCCG 45469 28 100.0 32 ............................ GAGTAGACCGCGTCCGGTGCCAGCCCGCTGAA 45409 28 100.0 32 ............................ CTCCTGTACTTGAGTTGAGATGCCGGTAGATC 45349 28 96.4 32 ...........................G CACCATTCGAGGAACGACAAACGCACTCGTTT 45289 28 100.0 32 ............................ AACCTTCCCGGTAACTTTTTCGCCAGACCCAA 45229 28 82.1 0 ...........CAC........A.C... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 CTGCTCCCCGCGTAGCGGGGATGATCCC # Left flank : GCTTCTCCCCGGCCGACTCCAGGCGGTGCAATTGCTGCTGCTGGTGGGCAGCCCGGGCATCCCGCTCCCACAGCTCGGTGGCATCCCCGGACTCACGCAGGGTAGCGGCGAGGCGTGCGCGTTCCTGCCCGGCCAACTCGGCGATGACGGCACGGAGCAGGTCGAGACGAGACTGGGCTTCAGCTGGGGTAGGGATGAGTGCGTCCTTCGGATGGGCGGGGGCAACTGGGGGGCAGCCTGGCAGTACCCGGCGAAATGACCCGCATCAACGATAGACCCTCTGGCTGTGGGGTGCCGTCTGGACGGGTGCAGAGGCCACGTGAGCGATGCGGGGGATCTGCGGGGTGAATCTTCGCGGTATTCGAAGGTACCGACTGCGCTTATTGCCATAGCCTTAGAGCATGATGTGGATTCACAATGACGCGAGAGGCAGGCTGCGGCGGCAAAAAGTTGTGATGGTAAAACCGGTGTTTGCGTCGCAAAGTTCCTGATCAGGTAGT # Right flank : GCACAGCAGGCACAACTCTTCAACCCCATAACCTCTCCCGCCCCCACCCCTAGACCCCGCAACCACCAAGGATTAAGCTGAGAACCACTCGGCGAGGCTCCGCCCGCCGCCAGGATTCAGCGTCGAAACGAGGACACCATGTCGCACCAACCTCACCGCCTTATCCCCTCCGACTTCACGCCGTGGCCCTCACGGGGCGCACAGGCTGAGGTGAAAATCACGAAGTACGTAGACCCCAGCACGGATACCGTGGGGCACGCCGTGTCTACCGACGGGGATGTCCCGTGGGTGATCGGCCTCGACCGTGAGGGGCTCGCCGCTGCGGGCTTCACCGGCAAGGTGGGCGAGACGCTCCTTCTCCCCCGGCACGGCGAACCCTCCCTCCTCGCGGTGGGGGTGGGTGCTGTCGGCTCACTCACCGTGTCGGCGCTGCGCAACGCCGCCGCCGCCGCAAGCCGCGGGGCCAAGCGGTCCCGGCACCTGGCGCTCGACCTCCTGGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAGACGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 50237-48387 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFPN01000004.1 Klugiella xanthotipulae strain DSM 18031 Ga0197545_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================================== ================== 50236 28 96.4 32 ...........................G GTGGCGCGGCCGCCGCACACCGGCGGATCAGA 50176 28 96.4 32 ...........................T GCTACCGCTGCTCGCCAAGCTGCCGCTCGTCG 50116 28 96.4 32 ...........................T CATGACGTTGAACACTCCAAAATCAGTCTCCA 50056 28 100.0 32 ............................ TCTTCAAAGTACCGCGCGATAAGCGCTGACCC 49996 28 100.0 32 ............................ TTGGCGAGCAGGGTCGGGTTGTGCGACTCGAC 49936 28 96.4 32 ...........................G GGCATGGCCCTGGGAACGACCCTCGTCGGTGC 49876 28 96.4 32 ...........................G ATTAAAGGTTGTCCCGAGACCTGTTACTCCGG 49816 28 96.4 32 ...........................T ACAACCTCTTCTGCCGGTCGGCCCGCACCGTT 49756 28 96.4 32 ...........................G TGGTCCGGTATACCCGCCCGGCTCGCGTGCCT 49696 28 96.4 32 ...........................T ACCGGCAGGGCTCCTACCTCACTGATGCTCAC 49636 28 100.0 32 ............................ CGAGCGATAGCGACCTGGTGCCGGGTGGTCGC 49576 28 96.4 32 ...........................G GGCTTGGCGGTCTGCTCAGTAGCCCGGAGATT 49516 28 100.0 32 ............................ GCTGACGGAACCGTGCAGGCCCGCAACGTTGG 49456 28 100.0 32 ............................ CTCGCCGGACGTGCCGGTCACGGCAGCGAGGT 49396 28 96.4 32 ...........................G GCCCGGCTCTTCACCAGCTCAGCCGTGATGGT 49336 28 100.0 32 ............................ GGCGGCGACCTCGTAACCCAAACCCTCGACCC 49276 28 96.4 32 ...........................G CAGCCCGTCCACCACCCCGCGGTACAGCTCCA 49216 28 100.0 32 ............................ AGCGTCTCCTCGGAGCAGGAGATGGGACACGC 49156 28 96.4 31 ...........................G GTGCTTGGGCTTTACAGAATCTGGAGAACGG 49097 28 96.4 32 ...........................T GGCGTCAGCCAGCTCGGTCCGCATTTCCGACA 49037 28 100.0 32 ............................ AAAGGAACTTTGGCGGAACGCAGCGTGCAGGC 48977 28 96.4 32 ...........................G TTGGAAGCGGCCGGTGTGGCCCACGCAGCGGC 48917 28 100.0 32 ............................ CGCGGCCGAGGCGCTGGCGGCTGAGGGTGTGG 48857 28 100.0 32 ............................ GATTTCTGCCGCCGACACTGCCCGGACCGTGC 48797 28 92.9 194 ..........................AG GTCTGCTTTGGTTGTCGCCATGAGGAAGCCGCGGCAATGTTCCTGTCCTCAGCTACGACACACTGCCACCCGCCCGATTACGATTGGAGCCTCCCATGACCTAAAATGCTTAAATGGTGTTTGTTTTTTGGCACCATAACTTTCCCGACTCAACGGGATGATCCTTTCGCGATGGGTGGATTCCCTTCGTAAGA 48575 27 75.0 132 A.T..T......C.........-..TA. CCCGGCCCGCAGGCGGCTGCGTCCCGAGGTCTCTCGCGTAGCGGGAACGTAATGGCCGGTGACAACCTAGGTGCTTCCTAGGCACCCCCAACGACCAGGAAGCACCTGACAGATTCAACGCAATGGGATATT T [48566] 48415 28 82.1 0 T..T........G...........A..T | T [48405] ========== ====== ====== ====== ============================ ================================================================================================================================================================================================== ================== 27 28 96.3 42 GTGCTCCCCGCGTAGCGGGGATGATCCC # Left flank : GTGGGGCACGTGTCGAAACGGGTTCGGGAACTCCTGTGGGAGAAATCCATCACCATGATCGGTTCGGGGCGGGCGATCATGGTTTTTACGGCCCGCAACGAACAGCGGATGTCCTTCACAGTTCACGGGCACCACTGGACCCCGGTAGATATCGACGGAATCTCGCTCATGTTGCGGCCGCACGACCCGGCGAGCCGGGAAGGGCCCGCCGGGTCGGGGAGCAGACCCAAAACAGGCTGGAGTAAGGCAGCGAAGCGGCGCAAATACGGCGGCGGGTAGCCGCGTTGGCCGGGGTGAAGGGTTCCTCGGGGTGAGAAGACAACAACACAATTTATGCATATGGTGCGTGACGGAGTAGGTGAGAGGTGAAACCTCAACGGGTTAGCGCGGAAGCCGCGACGCTAAGGCATACGATGTGCAGCATACAGTGGCACCTTGGTAGGTCAATAGAAGTGATTGTAAAACGGGAGTTTTGGGTTTAAAACACCTGATCAGTTAGT # Right flank : GACGGTGTGCCCCGGTTTCCCGGGGCACACCGTTTCTCCCCGCGGCGCGGGGGTTACAGAACTACACATGAAGCGCGGCGTTTCGTCCAACGACGGGGTGCCACGGATACCCGGCGCACAGCCACCAACGAGAAGCCCCGCCCCTACCCGTGCGGGGTCCCCCCCACCTCGGCTGAGCCCCCGGGGAGCGGGCTACCCCAGCCCCTCCGGCAGCTCCCCCGAGAACAGCACCACCAGGTCCTGTGTCGCCCGGCTGAGCGCCACGTACAGATCCCGGTACTCGGGCGCGGTCAACACCCGCCCCGCGACTCCCGGCTCCACGAGCAACACCCGGTCAAATTCCAGACCCTTCGCGTCGCGCGGGGTGCCGAGCCAGACCCGCTCGTGCACCGGTAGCGACTCGCGGAGGGAGGTGAGGGCAGGGGCGGGCATCCCGATTCCGGCGATAATCGCGACGGTACCCTCGCCGGTGTCGGCCACAAACCTGGATGCCTCTGCGA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAGACGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //