Array 1 163359-160828 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZND01000004.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163358 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163297 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163236 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163175 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163114 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163053 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162992 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162931 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162870 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162809 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162748 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162687 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162626 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162565 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162504 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162443 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162382 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162321 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162260 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162199 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162138 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162077 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162016 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161955 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161894 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161833 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161772 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161711 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161650 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161589 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161528 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161467 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161406 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161345 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161284 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161223 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161162 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161101 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161040 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160979 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160918 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160857 29 93.1 0 A...........T................ | A [160830] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181481-179866 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZND01000004.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462416, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181480 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181419 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181358 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181297 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181236 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181175 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181114 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181053 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180992 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180931 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180870 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180809 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180748 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180687 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180626 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180565 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180504 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180443 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180382 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180320 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180259 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180198 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180137 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180076 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180015 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179954 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179893 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //