Array 1 3933161-3931179 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077680.1 Salmonella enterica subsp. enterica serovar Kentucky strain YZ20MCS16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3933160 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 3933099 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 3933038 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 3932977 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 3932916 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 3932855 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 3932794 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 3932733 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 3932672 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 3932611 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 3932550 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 3932489 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 3932428 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 3932367 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 3932306 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 3932245 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 3932184 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 3932123 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 3932062 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 3932001 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 3931940 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 3931879 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 3931818 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 3931757 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 3931696 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 3931635 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 3931574 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 3931513 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 3931452 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 3931391 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 3931330 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 3931269 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 3931208 29 100.0 0 ............................. | A [3931181] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3952896-3950793 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077680.1 Salmonella enterica subsp. enterica serovar Kentucky strain YZ20MCS16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3952895 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 3952834 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 3952773 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 3952712 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 3952650 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3952589 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 3952528 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 3952467 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 3952406 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 3952345 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 3952284 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 3952223 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 3952162 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 3952101 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 3952040 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 3951979 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 3951918 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 3951857 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 3951796 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 3951735 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 3951674 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 3951613 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 3951552 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 3951491 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 3951430 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 3951369 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 3951308 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 3951247 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 3951186 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 3951125 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 3951064 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 3951003 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 3950942 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 3950881 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 3950820 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //