Array 1 393890-395599 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGUK01000002.1 Pseudomonas aeruginosa strain NCTC10782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 393890 28 100.0 32 ............................ TCATCTCAACTGCGCCAGCTCGCGCGACAACT 393950 28 100.0 32 ............................ TGAGTGGTGATGTTGACCTGCATGGGCATGGC 394010 28 100.0 32 ............................ TGGACGACGCCGACGACGCGATCATCGTCGAC 394070 28 100.0 32 ............................ CATCAGGCGAGGATGGGCGGCGATTGCTTGCT 394130 28 100.0 32 ............................ TACAAGAAGGACACGCCGATCAAACTCGGCAC 394190 28 100.0 33 ............................ AGACGCTGCGCTTGTTCCGCGTGGCGCTGTAGT 394251 28 100.0 32 ............................ TTGCCACAGCTCACGGCAATCAACGGCAGAAC 394311 28 100.0 32 ............................ GCACCGATACGCAGAAGCTGCTGGATGCGTAC 394371 28 100.0 32 ............................ GTAGGCCTTGGCAATGGCCATGAGATGCTCAT 394431 28 100.0 32 ............................ TCGTCCATCCGTGCCCGGCACATCCTGCGGTA 394491 28 100.0 32 ............................ TGCTGAACGAAGGCAAGACCGCAGAGGCTGCA 394551 28 100.0 32 ............................ CACGCCGGAGGCTGGCAAGGCGATGGTGCGAT 394611 28 100.0 32 ............................ AGGGCATCGATCCGTGCGTTAAGCAACTGGAC 394671 28 100.0 32 ............................ GTTTCGCGCCGGGGCCTGGCCAAGCTGCTGCG 394731 28 100.0 32 ............................ AGGAGCTGGCTCAATTGGACGACCTTGGTTCC 394791 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 394851 28 100.0 32 ............................ TCCCTGCACCGGAGTGGTATCGAGCAGCCAAT 394911 28 100.0 32 ............................ TGGGCGAGATCGGCGCGTAGCCGTAAGGCGAG 394971 28 100.0 32 ............................ AGAACGAGCCACGGGTATCGGCCTTCGACTCA 395031 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 395091 28 100.0 32 ............................ AGTTGGCGAGCTGGGCAACGTTGCTCGTCGAA 395151 28 100.0 32 ............................ ATGTTGTTCCTGGCCTCGGCGATCTTCTGGTC 395211 28 100.0 32 ............................ CGGATGAACTGCTCAGTGTTCATGCTGCCACC 395271 28 100.0 32 ............................ AGTTCTTCGTCAAGCACGTAGGGCGACTCGGG 395331 28 100.0 32 ............................ ATCACCGCCTTGACGCCGACGAAGGCAACAGC 395391 28 100.0 32 ............................ GTCGCGACAAGACCGAACCCGACAGAGAACGC 395451 28 100.0 33 ............................ TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 395512 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 395572 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 29 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 404812-404124 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGUK01000002.1 Pseudomonas aeruginosa strain NCTC10782, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 404811 28 100.0 32 ............................ TCCATCATAGAGAAACCCCGCTCAAAGAGGCG 404751 28 100.0 32 ............................ AAGCTCTGGGACATGGATGATTTCAGGTTCCA 404691 28 100.0 32 ............................ TTCGTCTCCGAGGTAGATATCGCTAGCGTTCA 404631 28 100.0 32 ............................ TCGGCATTGCCGAGCGCTTCGATTGATGTGTA 404571 28 100.0 32 ............................ AATCGGAAACGGGGCCGTGATCGTCCGCCATT 404511 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 404451 28 100.0 32 ............................ AAGAGGCTCACATCGCTCATAGCGTCCTGGGC 404391 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 404331 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 404271 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 404211 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 404151 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATTGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //