Array 1 93573-93178 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOQR01000011.1 Escherichia coli strain MOD1-EC6839 MOD1-EC6839_11_length_163745_cov_52.6979, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93572 29 100.0 32 ............................. TCGCTGAAAATTTACAGGGGATTCTCGAACGT 93511 29 100.0 32 ............................. GGCGTCATCATCAAACAGGGCGTCTAACAGCG 93450 29 100.0 32 ............................. ACTATATATTTCCTCAACGAGTAATTTTGAAT 93389 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 93328 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 93267 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 93206 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120766-119273 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOQR01000011.1 Escherichia coli strain MOD1-EC6839 MOD1-EC6839_11_length_163745_cov_52.6979, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120765 29 100.0 32 ............................. ACGCTGATTATTCCGTACCAGTATTGTGAGGC 120704 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 120643 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 120582 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 120521 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 120460 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 120399 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 120338 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 120277 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 120216 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 120155 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 120094 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 120033 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 119972 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 119911 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 119850 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 119789 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 119728 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 119667 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 119606 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 119545 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 119484 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 119423 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 119362 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 119301 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //