Array 1 209831-207724 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJOG01000002.1 Salmonella enterica strain SAGM-KPC scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 209830 29 100.0 32 ............................. CTGGCCGCGAGCGCCTGGTATACGGTTTATGA 209769 29 100.0 32 ............................. TAGCCGGGTGTTATGCGAGCTCGTCAGGGAGG 209708 29 100.0 32 ............................. CCAGCGGCAACCCGATCACCATCGAAGAAGAC 209647 29 100.0 32 ............................. CGATACGCATTAACCAGCACGTCGAGTCGGTC 209586 29 100.0 32 ............................. CCAGTTTGTTGATCACGTCTGCAACCTGGCTA 209525 29 100.0 32 ............................. TCGTGATCGACGAGGCCGCATTCCACGAGGCA 209464 29 100.0 32 ............................. ATATCGCTCGCTTAAAACTCTTAGGAAAAAAA 209403 29 100.0 32 ............................. TCATCCTAATTGTCAGCGTCCCCCCCACTGGA 209342 29 100.0 32 ............................. TGAAGAATCCAAACTCCGTGACTTTGAGAAAG 209281 29 100.0 32 ............................. AAATAGGTAAGGCTATGCGTCGCGGTGATAGC 209220 29 100.0 32 ............................. GCTTTCAAGTTATAATTGGTACACTTCTTAGT 209159 29 100.0 32 ............................. TCTTAATACGCGTGAGATCCCGAAATTTTTTG 209098 29 100.0 32 ............................. GATTGACTTAAAGATGAATGTAGAAAATATTA 209037 29 100.0 32 ............................. TGGGCGAAAGCATTTAATCGCGCAGCGGGCGA 208976 29 100.0 32 ............................. ACGCTGGCAACAGCCCCACACTCATCCGCCAT 208915 29 100.0 32 ............................. CTGTATGAATTACCCCTGCTGCCGGGTTCTTC 208854 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 208793 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 208732 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 208671 29 100.0 32 ............................. GCGGAGAATTATATATCGGAATGTTACAGGAA 208610 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 208549 29 100.0 35 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAGGTG 208485 29 96.6 32 T............................ CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 208424 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 208363 29 100.0 32 ............................. CCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 208302 29 100.0 32 ............................. CAAACAATGAAATTTTATTTGACAAATTGGCG 208241 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 208180 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 208119 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 208058 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 207997 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 207936 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 207875 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 207814 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 207753 29 93.1 0 A...........T................ | A [207726] ========== ====== ====== ====== ============================= =================================== ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCTAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227641-227064 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJOG01000002.1 Salmonella enterica strain SAGM-KPC scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 227640 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 227579 29 100.0 32 ............................. TCCATAGTTGCCGTTTCAACGGCTAACACTGA 227518 29 100.0 32 ............................. GCTACGAAGCGCCGCTGGCCGTGGCCTATACC 227457 29 100.0 32 ............................. TGCCGAAACTGGTGACAGAAACGGTGCAAAAG 227396 29 100.0 32 ............................. TAACGGTTGCCGAGGTTCGCGCCGCTGTGGCC 227335 29 100.0 32 ............................. GTTTGCAGAGATTGAGCCGTTCCCCGCTGCTG 227274 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 227213 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 227152 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 227091 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCAATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACATTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //