Array 1 93225-92524 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCYJ010000013.1 Escherichia coli strain 1490e NODE_13_length_93251_cov_17.560135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 93224 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 93163 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 93102 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 93041 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 92980 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 92919 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 92858 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 92797 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 92736 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 92674 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 92613 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 92552 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTAAAAACAGATATGTATGCTTAG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1177-172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCYJ010000016.1 Escherichia coli strain 1490e NODE_16_length_88591_cov_18.932560, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1176 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1115 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 1054 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 993 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 932 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 871 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 810 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 749 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 688 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 627 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 566 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 505 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 444 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 383 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 322 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 261 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 200 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //