Array 1 171138-172752 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNB01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171138 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171199 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171260 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171321 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171382 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171443 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171504 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171565 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171626 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171687 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171748 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171809 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171870 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 171931 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 171992 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172053 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172114 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172175 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172236 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172298 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172359 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172420 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172481 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172542 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172603 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 172664 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 172725 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189260-191790 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNB01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189260 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189321 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 189382 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 189443 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 189504 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189565 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189626 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189687 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189748 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189809 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 189870 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 189931 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 189992 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190053 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190114 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190175 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190236 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190297 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190358 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190419 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190480 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190541 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190602 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190663 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190724 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190785 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 190846 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 190907 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 190968 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191029 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191090 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191151 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191212 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191273 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191334 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191395 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191456 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191517 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191578 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191639 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191700 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191761 29 93.1 0 A...........T................ | A [191787] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //