Array 1 12380-13550 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDZ010000095.1 Salmonella enterica isolate 3009_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 12380 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 12441 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 12502 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 12563 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 12624 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 12685 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 12746 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 12807 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 12869 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 12972 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 13033 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 13094 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 13155 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 13216 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 13277 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 13338 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 13399 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 13460 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 13521 29 96.6 0 A............................ | A [13547] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 160681-162722 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDZ010000040.1 Salmonella enterica isolate 3009_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 160681 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 160742 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 160803 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 160864 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 160925 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 160986 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 161047 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 161108 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 161169 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 161230 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 161291 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 161352 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 161413 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 161474 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 161535 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 161596 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 161657 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 161718 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 161779 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 161840 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 161901 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 161962 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 162023 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 162084 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 162145 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 162207 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 162268 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 162329 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 162390 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 162451 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 162512 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 162573 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 162634 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 162695 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //