Array 1 97494-98986 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBFX01000012.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain B70HEB1.1 NODE_12_length_144984_cov_26.7091, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97494 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 97555 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 97616 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 97677 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 97738 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 97799 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 97860 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 97921 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 97982 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98043 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 98104 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 98165 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 98226 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 98287 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 98348 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 98409 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 98471 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 98532 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 98593 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 98654 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 98715 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 98776 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 98837 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 98898 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 98959 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115118-117082 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBFX01000012.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain B70HEB1.1 NODE_12_length_144984_cov_26.7091, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 115118 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 115179 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 115240 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 115301 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 115362 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 115423 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 115484 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 115546 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 115607 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 115668 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 115729 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 115790 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 115851 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 115912 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 115973 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 116034 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 116095 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116156 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116217 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116278 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116339 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116401 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 116504 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 116565 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 116626 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 116687 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 116748 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 116809 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 116870 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 116931 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 116992 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117053 29 96.6 0 A............................ | A [117079] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //