Array 1 2988768-2988190 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP070318.1 Salmonella enterica strain Colony596 chromosome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   2988767	    29	 100.0	    32	.............................	CGGANNNNNNNNNNNNNNNNNNNNCCGGGCAA	
   2988706	    29	 100.0	    32	.............................	TCTTCAGAAATNNNNNNNNNNNNNNGTCCGTC	
   2988645	    29	 100.0	    32	.............................	CCCGTTNNNNNNNNNNNNNNNNNGGACGGGCC	
   2988584	    29	 100.0	    32	.............................	GCTACATCGACAGCNNNNNNNNNNNNNNNNNA	
   2988523	    29	  96.6	    32	..........T..................	NNNNNNNNNNNNNNNNNNNNNNNNNNTCCGGG	
   2988462	    29	 100.0	    32	.............................	GCGANNNNNNNNNNNNNNNNNNNNNNNNCCAG	
   2988401	    29	 100.0	    32	.............................	TTTTAGNNNNNNNNNNNNNNNNNNNNATGAGC	
   2988340	    29	 100.0	    32	.............................	AATCAGNNNNNNNNNNNNNNNNNNNNNNGTTG	
   2988279	    29	 100.0	    32	.............................	GGCGTCGNNNNNNNNNNNNNNNNGCAGGATAC	
   2988218	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
        10	    29	  99.7	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT
# Right flank :  GGGATCGNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGTCAGCGGGGATAAACCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTGTTCCCCGCGCCAGCGGGGATAGCCGTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGC

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [20.0-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,5.51   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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