Array 1 428031-429035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWSP010000010.1 Klebsiella pneumoniae strain ZKP18 isolate ZKP18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 428031 28 100.0 33 ............................ TCTATGATGAAGAGCGCCTGTTTGCTGAACTCA 428092 28 100.0 33 ............................ TCTAAGGATGGCTCGCACCAGTTTGGCGAGTAC 428153 28 100.0 33 ............................ TGCAACTATCAACGGGATGCTCCTTGATGTATG 428214 28 100.0 33 ............................ TATGCTGAAGCCCTGATGATAAGCGACCGCCTT 428275 28 100.0 33 ............................ TATCATCAAGGCCGAGACTCAGGCTGATGTATG 428336 28 100.0 33 ............................ CCTATCATGCGCTTGTTGCTGCATCTTCTGAGC 428397 28 100.0 33 ............................ TGAATTAGTGTATAAAGCAAGGCGTGACTTTAT 428458 28 100.0 33 ............................ TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 428519 28 100.0 33 ............................ CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 428580 28 96.4 33 .............G.............. TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 428641 28 96.4 33 .............G.............. CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 428702 28 96.4 33 .............G.............. TATCGTGCAGAGTCACAACCTGACGGGATTATC 428763 28 96.4 33 .............G.............. TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 428824 28 96.4 33 .............G.............. TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 428885 28 92.9 33 ....C........G.............. CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG A [428888] 428947 28 89.3 33 ............TGT............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 429008 28 85.7 0 ............TG.....A.......T | ========== ====== ====== ====== ============================ ================================= ================== 17 28 97.1 33 GTCTTCCCCACACACGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 437789-439281 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWSP010000010.1 Klebsiella pneumoniae strain ZKP18 isolate ZKP18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 437789 28 100.0 33 ............................ TCAGTTACTGTTGCTGCTCCAGTAATTTCTCCA 437850 28 100.0 33 ............................ TCAGATATGCATGCAACGATCACATCGTACAGC 437911 28 100.0 34 ............................ TTATTATTGTTGACATCAATCCAGTAATCACCGG 437973 28 100.0 33 ............................ TGATGTTTTCCCACTCATCCTCTTCAAGGCCAC 438034 28 100.0 33 ............................ TGCCCGCTGCTACACCTGCGCCGCCGACCAGTT 438095 28 100.0 33 ............................ TACCTACGCAAAGGCTCTCAGGTGTATGTAGAA 438156 28 100.0 33 ............................ CATTGGTAAGACCGTGGCAATCAGCCGCATTGC 438217 28 100.0 33 ............................ TGTTATCGCATGGTACGCCAACGCTGGTGGGCG 438278 28 100.0 33 ............................ TTTATCCTTAAAAGTTTTCGATGTTCTGTTGAG 438339 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 438400 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 438461 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 438522 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 438583 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT 438644 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 438705 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 438766 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 438827 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 438888 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 438949 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 439010 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 439071 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 439132 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 439193 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 439254 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 25 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CNNCGGCGACCACCGAGATCTACACTAGATCGCTCGTCGGCAGCGTCAGATGTGTATAAGAGACAGTCAGAAACACCCCCACGCACGTGGGGGTGTTTCCGATGACAACTTTGCCTACTTCGCTGCGCTGGCGTCTTCCCCACGCACGTGGGGGTGTTTCTTCCTCTTCTTCCTGACAATCAGCGCAGCGCTGGTCTTCCCCACGCACGTGGGGGTGTTTCTGCGGGTGGATGACAATAACGCCTGGCGCGCCGGTCTTCCCCACGCACGTGGGGGTGTTTCCCTGTTAAGGATGACGCGGGGAAATGGGTTATCGTCTTCCCCACGCACGTGGGGGTGTTTCTCGATGGCGAGCTGCTGGTGAAAAAGTCGATACGTCTTCCCCACGCACGTGGGGGTGTTTCTCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAGGTCTTCCCCACGCACGTGGGGGTGTTTCTGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 439352-439928 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWSP010000010.1 Klebsiella pneumoniae strain ZKP18 isolate ZKP18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 439352 28 85.7 33 AA.AC....................... CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 439413 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 439474 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 439535 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 439596 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 439657 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 439718 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 439779 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 439840 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 439901 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.6 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTCTTAACTATGCAGCGTAACCGTGCTTTCGTCTCAGTCTTCCCCACGCACGTGGGGGTGTTTCCTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCAGTCTTCCCCACGCACGTGGGGGTGTTTCTATCAATCTCTGAAATCATTTTGTCTATTTTGTGTCTTCCCCACGCACGTGGGGGTGTTTCCGCGACGACCTCGTCATCCTCCCCGCTGCGGCTGTCTTCCCCACGCACGTGGGGGTGTTTCTACACCCAGCTCTTTGACGCAAAGGCTCAGGAGGTCTTCCCCACGCACGTGGGGGTGTTTCTCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGCGTCTTCCCCACGCACGTGGGGGTGTTTCCTGGTTGACGTATGCCGTGATGCTGCTGGTAGGGTCTTCCCCACGCACGTGGGGGTGTTTCNNCGGCGACCACCGAGATCTACACTAGATCGCTCGTCGGCAGCGTCAGATGTGTATAAGAGACAGTCAGA # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACGCACGTGGGGGTGTTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //