Array 1 293775-294509 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JABXMM010000001.1 Listeria monocytogenes strain 2013L-5397 NODE_1_length_1484814_cov_21.1255_ID_1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    293775	    29	 100.0	    35	.............................	TCATAAATTACGACATACACATATCGTACAGTGTT  	
    293839	    29	 100.0	    35	.............................	TGTTGTGAATTTGCTTTTCGGTCAAATTCATCTGC  	
    293903	    29	 100.0	    34	.............................	AAATTATCTGCAGTGTTTTCTGCGGTTTCGCTTG   	
    293966	    29	 100.0	    34	.............................	AACCTTATTGCTTTCGCCTGCTTTGCGTTTTTCA   	
    294029	    29	 100.0	    36	.............................	CTCTTTAGTTGTTGTATTTGCCATTAAAAGCTGTGT 	
    294094	    29	 100.0	    34	.............................	ATGTCTCGCCTTCCACTTCTGAAACCGCAGCAGA   	
    294157	    29	 100.0	    36	.............................	TCGGTATAAATACGGCTTATCGCATTTCGGATTTGT 	
    294222	    29	 100.0	    35	.............................	TAAAAACCCAGTCCGTGCCCGTATTGAACGCTAGC  	
    294286	    29	 100.0	    35	.............................	TTAATTTTTAAGTGCCAGATTCCCTAAGAATTAGA  	
    294350	    29	 100.0	    36	.............................	CCCGGAAAGTCTGGGCTTAATAAAGAAAAGAATCTT 	
    294415	    29	  96.6	    37	..............A..............	GAAAAAGCACTTTTCAGTACTCGTTCGTTTTCTTTTT	
    294481	    29	  82.8	     0	......A........CA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        12	    29	  98.3	    35	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                     	       

# Left flank :   CGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTTGTGATCTGTCGACCTTGAGTAGTGCGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  TACCCTTCATATACACCCTCACCACCATCCATCAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCATAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCA

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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