Array 1 28574-30103 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWW01000046.1 Pseudomonas aeruginosa isolate M, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28574 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 28634 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 28694 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 28754 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 28814 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 28874 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 28935 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 28995 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 29055 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 29115 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 29175 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 29235 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 29295 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 29355 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 29415 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 29475 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 29535 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 29595 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 29655 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 29715 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 29775 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 29835 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 29895 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 29955 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 30015 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 30076 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40266-38977 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWW01000046.1 Pseudomonas aeruginosa isolate M, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40265 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 40205 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 40146 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 40086 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 40026 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 39966 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 39906 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 39846 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 39785 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 39725 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 39665 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 39605 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 39545 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 39485 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 39425 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 39364 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 39304 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39244 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 39184 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 39124 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 39064 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 39004 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //