Array 1 472077-473546 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBFW010000005.1 Pantoea coffeiphila strain 1480 Ga0454181_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 472077 28 100.0 32 ............................ TGGCGTGCCACTTCGGCGATTAGGCTGGTTTC 472137 28 100.0 32 ............................ TGGAAAAACTTCTGGGAAGAAATGGCCCGTAA 472197 28 100.0 32 ............................ ACCACACCTCTATCTCCGAAGGCGTTATATTT 472257 28 100.0 32 ............................ TGGTACATCGAGCCAGCGGAGACCGGACCACC 472317 28 100.0 32 ............................ AATCGTCAATATTGCCATCCCAATGTATGAGG 472377 28 100.0 32 ............................ TGCGTGATAGTCTCGGGCCAGGCAGGCGTAGT 472437 28 100.0 32 ............................ TTTCCAACTCCGCAACGTGGGCTACTGGATTC 472497 28 100.0 32 ............................ AGTGCAACATCCAGAGGCTGTGTATTCCAACC 472557 28 100.0 32 ............................ TGAATCATAAAACCGGTGGTGGCATCCTGATG 472617 28 100.0 32 ............................ GATAAGACCTGCAAAATCTCCTCATCGGTCGT 472677 28 100.0 32 ............................ TACAACCCCGGATGTAACATGAATGGCGAAAA 472737 28 100.0 32 ............................ TTCCCAGATGATGCCAGCACCAGCCACAGACG 472797 28 100.0 32 ............................ TGACAGCGGACCAGCAGCGCGTAATTGCTGAA 472857 28 100.0 32 ............................ CAATCGCGTTAAACCCGTTGTTCTGGTCCAGC 472917 28 100.0 32 ............................ AGGAGAATGGTGTAGTGCTCTGCAAAATGGGG 472977 28 100.0 32 ............................ TGACAGGCAAAACCGGCAGTCCGCCAAAACCT 473037 28 100.0 32 ............................ AAACTCGCCTACCCATACCGGCGCGATGTTCT 473097 28 100.0 32 ............................ AAATAACAGCAATGTGCAGAGACTGGTAATGT 473157 28 100.0 32 ............................ AGAGAACGGCTTGAATCCGATAACAGTGACAT 473217 28 96.4 32 .......................C.... CATTCGGCAGAACTGTTCGGGTGAGGCTTAAA 473277 28 100.0 32 ............................ TTTCAGGAAGAGAGACCATCGAAGCCGTCAGG 473337 28 96.4 32 .................A.......... AGTATTGGGCCTCAAGCGCATTAATTGCCGCT 473397 28 100.0 34 ............................ AGGTTGCAGCCCGTAGCTCTCGGTGCGAATGATC 473459 28 100.0 32 ............................ TTACAGTCCTCACAGGTGTCCATGCCCCACTA 473519 28 82.1 0 .......A......T...C.....C.G. | ========== ====== ====== ====== ============================ ================================== ================== 25 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTGCTTTCAATATGGAGAAACCCGCGTTCGAGGCGAAGCAGGGCGTGTGGGAGAAGTGGACCATCTCCGGTGAGGGCGACATGATGATGCATCCTTTCCACGTGCACGGCGCCCAGTTCCGCATCCTGTCTGAAAACGGCAAACCGCCGGCAGCGCACCGCAGCGGCTGGAAGGACATGGTGCTTGTAGAGGGCTGGCGCAGCGAAATTCTGGTGCGCTTTAACCACAAGGCGGACAAACCCAACGCCTATATGGCGCACTGCCATCTGCTGGAGCATGAAGATACCGGGATGATGCTGGGCTTTACCGTGGCGTGATGGCTGGAGCCGCCGGGGCAATATTGTGCCTCGGTGGAACTGGTGAGTTGATACCCTTTATTTTACGGTTTTTTCATCTATCTGATTTGTATGGATATTATTATGGCTGTAAAAAAGAGGGGTTAACGAGCGCTTAAAGCGAAAACCTGATTATCCTCATCGGGTTATCGTGACAGGATAACG # Right flank : ATGCTTGCTTTATCTACGAGCCAGGTAGAACAGGTGTACTATCGTACTGTCTCCATCACTAGAATCACAGTAGCTTATCTGGGCACATTGTTTGACTGACGTAAATTAACTAATTGAATTTTATGAATTAAACATTGTTGTTAAGTAGGGGCATGTAAGATAAGCTTGAACAACTCTTTAGCGTTGGACGTATTACGTCTAGTCGGGTGATTAGCCAGACTCTAACTTATTGAACGTATTTGGGGTTGCGAAAGTGTCGCAACCCTCACTCGTTCCTCCTTCGGGTTGCGACACTTTCGCTTCCTTTAGTAAAGAGTTGAGCCCGGAAGAATAGATCCTTCCGGGCTTTTTACAGGTAATATTATGTCGTTAATTAACAGGTTAGCTACGTCGTTACAGCAGAGCGAACTGAAGGTAAATGCATACCTGGAAGGTGCATCGGGTAAGTACAAAGTTTACAGAATTCCCAAACGTACAACGGGTTTTCGAATCATTGCGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 487572-489220 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBFW010000005.1 Pantoea coffeiphila strain 1480 Ga0454181_05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 487572 28 100.0 32 ............................ ACAGTCAAGACAAGATCCTGATGATAAACTAT 487632 28 100.0 32 ............................ AACAGAAGTATCGGCGGGAACGCTGACAATTG 487692 28 100.0 32 ............................ TTCTACATAGCCTCGCCTACATAATTGAATGC 487752 28 100.0 32 ............................ AAAACGTTGCAGCCAACACACAAGCAATTGCA 487812 28 100.0 32 ............................ ATAAACCTTTACCATGCCCACCGCCTACACCA 487872 28 100.0 32 ............................ ACGATAAGCCGCTCTCATTTTTTCTTCAACCA 487932 28 100.0 32 ............................ GACAACAATGTTTGTTTGAACTCCGCGCCGAG 487992 28 100.0 32 ............................ TGATTACAAATCAGTTTTTTCATCATATCAGC 488052 28 100.0 32 ............................ AAAGAAAGCCAGATTTTATCCCAAACAAATCA 488112 28 100.0 33 ............................ CAATCCAGATGGAGCTGAAGTGTAATCTTTTGG 488173 28 100.0 32 ............................ TCGTTAACCTGTTCCAGATTCTGGTAGAAAAC 488233 28 100.0 32 ............................ AGAAGCGCAAGCTTATTAACGATGTCTTCCTC 488293 28 100.0 32 ............................ TCAAAATGGAGGCCGGAAAGGTCAAGTTCTGT 488353 28 100.0 32 ............................ CAGTAGACCCCTACGCCAGCTGCGTCGCAGAT 488413 28 100.0 32 ............................ ATTCTGGACGGGCGTAAGACGCAGACGCGGCG 488473 28 100.0 32 ............................ TGCGAGCATGGGTGAAGACAAAAGAGGAATCA 488533 28 100.0 32 ............................ CATCGTGAATGCTTTCCAATCTGCCCCCGCAG 488593 28 100.0 32 ............................ TGGTTCCACCACTTGCCCCGCTTGATTTGGGG 488653 28 100.0 32 ............................ TACCTTCGCATCAATTAAGCCGCTGACAATCT 488713 28 100.0 32 ............................ ATTGAAATCTACAGGAGCGACTATTGGGAGGG 488773 28 100.0 32 ............................ TTTTGATTGAGCAGCCAGGTCAGCAGATGTTG 488833 28 100.0 32 ............................ ATTCGCCAGCCGTGGGCCTGGCTAATCGTAAA 488893 28 100.0 32 ............................ TGAGTGAGATAACGCTTCTTCACTGAATCGCT 488953 28 100.0 32 ............................ TGTCCCGGTCGTTCGCCATAACCCATCTGGAT 489013 28 100.0 32 ............................ TAAATCCAAATGGAAATTTCAGAAGGCCGCAT 489073 28 100.0 32 ............................ ATCACCGGCTTCTGATTACGTCGAGACTCGGC 489133 28 100.0 32 ............................ CACCAGCGAATCGCTTCGCATGCGCCTTTACG 489193 28 82.1 0 .....................CCCA.T. | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGATTTGTCTTCCCTACAGCAGTGCGACTGGCAGCATGGTCTGAAGGATTATATTCATTGCGACGTTATAGCCAGGGTGCCAGAGAATAAAAGCTGGCGCACCGTCAGGAGAGTGCAGGTCAAAAGCAGCGCTGAGCGCCTGCGCCGCCGCTCGGTTAAAAAAGGCTGGTTAAGTGAATCAGAGGCGCAGCAGCAGATTAACGCGATAAATGAACAGCGTAGCGATCTGCCTTTCCTGTTTATAAAAAGTGGCAGCAACGGTAACGCCTATCCATTTTTTATTGAGCATGGTCCGATCGGTCCTGTGCCGGTTCCTGGAGAGTTTAGTTCCTATGGCTTGAGTGCCACTACACCTATCCCCTGGTTCTGACCCTTTTTTTTCCTCCAACGCTAACCTGTTGATTTTTATTAGCGTTGGAGGGGCCGTTAGAAAGAGGGTTTATTTAGAATATTTGGCTTTTCAGCCTGTTTCACAGATGGTTAGATGTTTTTCATAACA # Right flank : AAAACATCCAACGACAACTCATAACCAGCAGCTCCACCGGCTGCCGCTGGATATCAACCGTTACCCCAGCAGCGCCAGCCGCAGATCCTCGATTAAATCGTCTTTATTCTCGATACCGATCGACAGGCGAATGGTGGTGGATTTAATGCCGATACGGTCGCGGACCTCCAGCGGAACGCCTGAGTGGGTGGTGCTGGCCGGGTGGCTGGCGAGGGATTCGGTGCCGCCCAGGCTGACCGCCAGCTTGAACAGCTGTAGCGCGTTGAGAAACTTAAACGCTGCCGCTTCACCGCCGTGAATATCAAAGGAGAAGGTGGAACCGGCACCGCTGCACTGGGCGCGATACGTTTCGCCCTGCGGTGAGTCGGCGTCGAGGAACGCCAGGTAGTGGATGTGTTCCACCTGCGGATGGCTGCGCAGAAACTCCGCCACCGCGGCGGCGTTGTCGTTAGCGCGCTCCATTCGCAGCGCCAGCGTTTCCAGCGATCGGCCAATCATCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //