Array 1 812504-811935 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034236.1 Pectobacterium carotovorum subsp. carotovorum strain BP201601.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 812503 27 92.9 32 T.........-................. GATAATCCATTCCATTACTTGTCCTTGTTGTT C,GA,T [812486,812497,812500] 812440 28 100.0 31 ............................ AAAATAGAGCGACCAGTAACATCAGGAAGAT 812381 28 100.0 32 ............................ GCCAAACTCTATCCATGACCCACCCAGGTGTG 812321 28 96.4 32 ...........C................ CGTTGGTTTAGCATCGAATAATCGCGCCTTGC 812261 28 96.4 32 ............G............... CGTAAAGTCATCGGGCAGATCGTAAATAACAG 812201 28 96.4 32 ............G............... ATCATCACGCGACGCATTGCCCTCGGGTATGA 812141 28 96.4 32 ...........C................ TCACCCTCTCAGTTACTTCGCCCTCTAAAAGC 812081 28 92.9 32 ...............T.T.......... ACACGGTCACGAATAGTGATCCGCATGATTAA 812021 28 96.4 32 ...............A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 811961 27 82.1 0 ............GC........-...TG | ========== ====== ====== ====== ============================ ================================ ================== 10 28 95.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGGTGTACATAACGTCTTTAAAAAATACGTTGCTTCCTGCGCAGTCAATATAGCATGAATGTTATCGTTATTTATTTCATTTAGTTGAGCATGTAATTTATGATAGTTAATATCTGCATGCTGCTTTTTAAAATCAAGATGATCTTCTAACCGATAGTCATCATCCACAAGCGTTTTTAAAACGGGATCGTATTTCACAGTCACTCACTCCATTGAATTTGACTTAAGTCAACGTGCTATTCCCCTGTGAAAACACTTTAACGGAAAAATGATGATTTTTAAATATTAATAATGCCGCCCCCACAATTTTTCATTCCCTATAAAAGAAACTAATTACTTAAAAACGTTACGAAAGAAGGCCATCAATATGCGTTATTTAAGGGGGTGAGCGCTGGCGCAGTACTACCTCGATAATAGCCAGACAACAGCGCTTAAGGTCGTGGATAAACTGCATGTGCGGCAGTGAACGTAATTGACCCGCGAATCGGGATCCATCTATT # Right flank : CTTATCGGGATGCGTCGCTGGCGCGACGCATATCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAAGCTGTTGCCGAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAGGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCAGAGGTGTGTTTGATGAACACCTGCATCAACCCGACTTTTATCTGGCGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCCCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCTCCGGCTATCAGGCTTCACGCGCCAGAATCGGT # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 819648-819439 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034236.1 Pectobacterium carotovorum subsp. carotovorum strain BP201601.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 819647 28 92.9 33 A..T........................ GACAGGCTTACTGTGAAGCTGGTACTGACTATC 819586 28 92.9 32 ...........CA............... CACGCGCCATGATTCAGGTCGGCCTTCTGCGG 819526 28 100.0 32 ............................ CCGATTTCAGCAATTGCGGCGTCTGTGGCCGG 819466 28 82.1 0 ...A........AC......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.0 33 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AACCGACGGACGTCGGCGGCACGCTGTTTGGCGGCATGTTTAGCGCGATGTTCGATCTCATCTCCTGGTCTTGCGCAGCATCGGGGTTCTGCTTTCTGGCGCTCTTCCGGATTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGGCTGGTGCAAATCGGTATCAGCGCCCTGTGGCGCATTCAATATTGGCAGGATTATGAAAACGACAATGTGATACTCTCCCCGATGCCCGGTGAGCTGTATGTTTCCATGCTGGTAGGCGCAGGCATGGCCGCCATCGGCATCGTGAAATATCGACACGCCCGGCACAACCCAGTCGCTCAACGCCCAACCTATGCGAAAGCGGTCGCCGCATTGCTGCTAGTTGCGCTTTATTTCGCGCTCCCGCTGCATCTCTACCTACGTGAACCTCTCCCCTACTGCGCCTTCAGCCCTGACGGCCAGCAGTTAAGTATCTGTCTGGGAGACAATGACGAGCGGATTATTGTTGAGTGATGG # Right flank : ATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGGCTGCCCAATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACTAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCAGTCGGGCTGGAATGTCTAGGGTTAATTGAGGTGCGACTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 3.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4350792-4349724 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034236.1 Pectobacterium carotovorum subsp. carotovorum strain BP201601.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4350791 29 100.0 33 ............................. CGGTCAAATTAGGCTTCTATCTCAACATCTGCC 4350729 29 100.0 32 ............................. CCCAATATAAGACTTGCATGACTCACAGATAT 4350668 29 100.0 32 ............................. GCAGTAAAAGCCGCGTGGACAGTGGACGTTCC 4350607 29 100.0 32 ............................. CCATTGGCTTTGGCTGGAACGTGAAGGCGCAG 4350546 29 100.0 32 ............................. CGCGTGATACTAATACCGTTTTCAGGGTTGCA 4350485 29 100.0 32 ............................. AGTCAACCATTCGCCCTTGTCGGTGTAGAACT 4350424 29 100.0 32 ............................. CAGATGATACCAGCTACTTCACCACTCCAGTG 4350363 29 100.0 32 ............................. TTGATGCCTTCATAACGTAGAGCCAGATTTTC 4350302 29 100.0 33 ............................. CGTACTGAGGCAAGCCGATGCCACCGGACTGCC 4350240 29 100.0 32 ............................. GCCTGCCGCGCGCCGAACTTGTCGCCGGCGTC 4350179 29 100.0 32 ............................. TACCGTATGGCGGCTACTGGCTGGACAGAACT 4350118 29 100.0 32 ............................. CACACCAGGATCCGAATTCGAATCACGTACAG 4350057 29 96.6 32 .............C............... GGCGGCAGCGTGGTGACGCACAAAATAAAATA 4349996 29 96.6 32 ..........T.................. ATTGTGCGATTTCGGGAAACCACTGCCGTACA 4349935 29 100.0 32 ............................. GTTTCCGGTGACGAGTGGAACACGGTGATGGA 4349874 29 100.0 32 ............................. ATTGACATGTTTCTGCCTCCTGATCTGCCGCG 4349813 29 96.6 32 .............C............... TTCAGAGATTGCCAATCAGATGCGCCGCCGAG 4349752 29 93.1 0 .............C.............T. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TTCCTGCTAATTATTTACTGCGTTACTTCAAGACGATGGATATGCATTGATTACTTCCAATTTATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAGTATTTTTAACGGGGAAGATTTTTACCGAGAAATAGAAATAAAAACGCAGTGGTATAACTCTTGCCGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGTCGACGAATACGGAATTCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCATCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGGAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTAATTTTAGA # Right flank : GGCTTATACCCCTTATTGCATGTTGGTCTAAATGTTCCCCGCACGGGGTCAAATCCCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCTATTTTTGCGCCCACCGTCACGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACTGCTTCAGTCTTATCAGGCGGGCAGCGGTGCTGTTCCTGCTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGTCCTGCTGAACTGTATGACACGGTCGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGGAGCATTCCACCTTCCAATGTGTTCCAGCCGATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4354134-4353556 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034236.1 Pectobacterium carotovorum subsp. carotovorum strain BP201601.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4354133 29 100.0 32 ............................. GATTGAGTAATTGGAATAGTCGGTATCTGTCA 4354072 29 100.0 32 ............................. TTTCTTACCGGGGGATCGTCAGGGATGCTTGC 4354011 29 100.0 32 ............................. TTGTGACGAATAACGGTAGCAACCCAGAAAAT 4353950 29 100.0 32 ............................. CTGATCGCCCGACTGAGAAAATCGCCGCGCAA 4353889 29 100.0 32 ............................. AGTGTAATCACTATAAACAAACAGGAATAGGC 4353828 29 100.0 32 ............................. TGACATGGTACGGCGAGAAATACGACTCTGAC 4353767 29 100.0 32 ............................. AATACCTGAGAGCCATGCAGTCCGGTAAATAT 4353706 29 100.0 32 ............................. AATCGTTGGATTGAAGGCGTGCTTTGCGGCGC 4353645 29 100.0 32 ............................. CACTCGGCAGCAATATCGCTGCGGGTGATCGA 4353584 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGATGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGTGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAATTCTCTACTTTTAGA # Right flank : TAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCATCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //