Array 1 1258586-1259862 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTE01000001.1 Porphyromonas endodontalis strain NCTC13058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1258586 30 100.0 35 .............................. CGATTTCAAACTCCGCTAGTCTTGACTTTGACAAA 1258651 30 100.0 36 .............................. AGGTTAAACGCAGAAAACCTAGCATTATCTTCATCG 1258717 30 100.0 36 .............................. AATCAAACTTATAAGCTTGCTTAATGTTAAGCGTTT 1258783 30 100.0 36 .............................. ACTCGCCAATCAGTAGAAGGTTGTTCCGGAGCTTGT 1258849 30 100.0 34 .............................. CGCTATATTGTCTCTCTCCTTTGTCCCCCTTATT 1258913 30 100.0 36 .............................. AAAGAAAGAAGATAAAGAAGAGAAAGGAGCCTCTCT 1258979 30 100.0 34 .............................. CAAATAGACTGGGAGAAAAGGAAATACGAGATAG 1259043 30 100.0 38 .............................. AGCCTCAAATATATTGTAAATGCACTCGCAAATGGCGA 1259111 30 100.0 35 .............................. GAAGTTTTGAAGATCAATAGACTCTATTTGTCTGT 1259176 30 100.0 36 .............................. TGTTTAATTTATGCTCAATATCGTAAAGAGTAGGAG 1259242 30 100.0 35 .............................. GAAGTCGCAACACCAACGTTAAGAACCTCATAATC 1259307 30 100.0 36 .............................. ATTTAGTTGAGACCATTGCTGAGCGTCGACGAGTTG 1259373 30 100.0 35 .............................. ATCGCCAAAGCCCGTGAGGGCGAGGATGACATCGT 1259438 30 100.0 36 .............................. AAGGCAAACTGCTCCTTGTCAGACAGCTCGGCAAGG 1259504 30 100.0 35 .............................. ATCGCCAAAGCCCGTGAGGGCGAGGATGACATCGT 1259569 30 100.0 36 .............................. AAGGCAAACTGCTCCTTGTCAGACAGCTCGGCAAGG 1259635 30 100.0 34 .............................. AAACTTATCGAAGACGAGGCTGGTCGCACAATAG 1259699 30 100.0 38 .............................. TTCGTAGTCGACTTGTCCGGGGATGATGATCTTCTTCT 1259767 30 100.0 35 .............................. TGATCAAAAAAGATTTACTTCGTTGCTCTCTTCTA 1259832 30 86.7 0 ..............C....AT.T....... | G [1259854] ========== ====== ====== ====== ============================== ====================================== ================== 20 30 99.3 36 CTCCAAATTGTACCTTAGTGGAATTGAAAT # Left flank : TATTGGGAAAAGAAAAAGCTGCGATAGATAATTTCCTCTAGCCATGGAGATCCGAGAAAGTTTTATTCTTTCTAGCATTACGAGGGGCCTTTCTCTGTTGTATGGGCGCCTATAGTACAGGTTCTTGATACTAGGTAGCACAAGATTGCTAGGGTCAAGGCTTCTACTAAACGATAGATTGCTACTGAAGAGAGTACTTTTCTATTTCAGTATTTATTGGTAATATTGCTGGAGCTAGATAAGTACCAGTTCGCACAAAGAGGGTGGGAGATAGCGGTTTCAGAGCTCTTTTTGTGTCGAAGAAGGAGCTTTTTCTGAGGATAGCCATACCTCAAATAGATTGCACCGTTGAAGTGTTTGGTTAGCAGATAATTAGTGCTCTTGTCGATCCTCGGCCCTTTTCTTAGGATTGCACATCGACGATATTTTCTCCTCATTATCTCATCGGAAACGTTTCTCAAAGCCCTTGTTTATGTGATATTTTCTGTCTAACTTCACGG # Right flank : TATGGGGGGGAGTCAAATGGGCGTTCTCTCTTGATGTCACGCTAACAAATTGCTCTCAGAGGGAGGGGGAATTGGATTGTCCTGTGGATGACATAACCATTCATGGGGCAATTTTTTGTTGAGTCGAGGGGAGAGGGCAAGAGTGGTTGAGTTGAAGATATATAATAGACAGTTCTTTTTATTGCGGCATTTCGAATAAAAATCTTACATTTGTGCCGAATAGGGTTAATGACATGGAGATATAAATTATTCCATTTCTTGAAGACCTTGATTATAATGAAGAGTATAAATGAATCAAAATGCCAGAGATGAAAAGGAATTTGTTGCTTATTGTGGGAGTCTTCTCCTTCGTTTCTCTCCTTCTTGCGGGATGTGACAATGGGACTAAACCTCCCTCTCCTCAGAAGATTTCGGAGATAAAATTTGAGAAAGAAACTGTCAATCTTTCCGTTGGCGAGAGTCTACTTCTTAGGCTCATTGCTACGCCTAAAGAGGCTACT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCAAATTGTACCTTAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 1435975-1431135 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTE01000001.1 Porphyromonas endodontalis strain NCTC13058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1435974 32 100.0 34 ................................ TTTTACACCTATTTCTTACGACAGTTTTACTGAG 1435908 32 100.0 36 ................................ GTCTCAGATACTTGTTTTTCTGAAAAACTTTGATTA 1435840 32 100.0 37 ................................ CATTTTGAATAATGTGATGAACGCAGAGAATGCTCGA 1435771 32 100.0 36 ................................ CTGGACAGGCTCCTAGCCTTCGTTACATCGTAAATG 1435703 32 100.0 35 ................................ ATTGGATATGGATGGTAACTCAGATATTAAAGTAA 1435636 32 100.0 35 ................................ GAATATTCCCGCTCAGTTTGGCTTGGATACACAAG 1435569 32 100.0 35 ................................ TTTAATCGTTTTTATTACGTTCCTTATCGCATTTT 1435502 32 100.0 34 ................................ CTGGACAGGCTCCTAGCCTTCGTTACATCGTAAA 1435436 32 100.0 34 ................................ ATTAGACATGGATGGTAACTCAGATATTAAAGTA 1435370 32 100.0 34 ................................ TTGATAGACAGATTGAATCTATTGATTTACAGAA 1435304 32 100.0 34 ................................ TGAAAAACTTTGATTACCTTTGTATCGGTAATAA 1435238 32 100.0 34 ................................ TGCTGCTGGTTCGACTCCCGTAATACCCTAATTA 1435172 32 100.0 35 ................................ TCAAACTTTCAGGCCACATTATCATCTCATAATGT 1435105 32 100.0 34 ................................ CAAGCACGTATTTAAAGTCAAAGGTAAAAAAACC 1435039 32 100.0 35 ................................ CAAGCACGTATTTAAAGTCAAAGGTAAAAAAACCT 1434972 32 100.0 34 ................................ GCTTGGAGCTTCGAATATTCCCGCTCAATTTGGC 1434906 32 100.0 36 ................................ GACGTTCGGCATGGACTGTCCGCAACCTTGTTGAGT 1434838 32 100.0 33 ................................ TTTTACGATCCCTGTCTCTGCATCAACTTTATT 1434773 32 100.0 36 ................................ GCTAACAAATGTAACAATGGAAGTCCAAATCGAGCT 1434705 32 100.0 35 ................................ TTACCCTATGCCTCGTTTTTACATCGAACGTAAAT 1434638 32 100.0 36 ................................ CAAATTCGCCGTGCTCGCCTTTTTAGGGATTATTTT 1434570 32 100.0 35 ................................ TTTGGTAATATGGCTAATGCCCCGTCTTCGATCCC 1434503 32 100.0 35 ................................ ACCTGAACCAGACAACCCTCCTACGCCAAATGAAC 1434436 32 100.0 34 ................................ CTAATACACAGTACGGCAGTGCTGTCTCTCTGGA 1434370 32 100.0 35 ................................ GCAACTCGTTGAACTATTGGCACTTTGGTACTAAT 1434303 32 100.0 36 ................................ AGAAAAACTTTGATTACCTTTGTGTCAGTAAAAGTA 1434235 32 100.0 34 ................................ TGAGGTACTCCAGCAACCGATCTTGCTTGGTTCA 1434169 32 100.0 36 ................................ TTGTCAAAAACTTAATTCCCCATCATCTTTTTCAAA 1434101 32 100.0 33 ................................ CTTGATTATTAACTATTAAATATGATTTTATGT 1434036 32 100.0 34 ................................ TTAACAATGTCATGAACGCTGAGAATGCTCGAAA 1433970 32 100.0 34 ................................ ATCTAATACAGGGTCTTTATAAAAATAATTATAA 1433904 32 100.0 35 ................................ TAGGAGTGTTATATCCACGCTTAAGATAGGTTTTG 1433837 32 100.0 37 ................................ AGATCCGGCGTGCTCGTCTTTTGAAGGACTACTTTAC 1433768 32 100.0 34 ................................ TGAAGAATTGTCAACAGGAACTGGTCGGTTAAAA 1433702 32 100.0 35 ................................ TTTTGCATGGTGCTAGGTACATTGATTACCTTAAA 1433635 32 100.0 36 ................................ ACTTCTTGATAGACAGATAGAATCTATCGATCTCCA 1433567 32 100.0 36 ................................ TTACTACTGGACGTATGGGATGAATAAGGTAGACAC 1433499 32 100.0 35 ................................ TACATTAAGCGGGGGTATAACACCCCCCGCAAATT 1433432 32 100.0 34 ................................ ATCTTTTGGTGGACACACAGGAAAGTCTGTTTAC 1433366 32 100.0 34 ................................ TTGGCAGGATGTAGTTCCAGGTGACACGTTCAAA 1433300 32 100.0 33 ................................ TGAGAAACTTTGATTACGTTTGCCTCCGTAAAG 1433235 32 100.0 34 ................................ AATCTTACTAATGAGCTTAAAACAAGCTTTGAGA 1433169 32 100.0 34 ................................ GACCGAAAAAGGATTGTTTTTTACGCGAGCATCT 1433103 32 100.0 34 ................................ TCTAGACATGGACGGCAATTCAGACATTAAGGTG 1433037 32 100.0 35 ................................ CCATTTTGTTTTTGATTACAAACTTTGGTAAGGAT 1432970 32 100.0 34 ................................ AGCCTCTTACCGCTCCTGTTATGGATAGACTTCG 1432904 32 100.0 35 ................................ CAGTTATTGGCTTTAGAATATCGGATAGCAAAAGG 1432837 32 100.0 35 ................................ CATTTTGAATAATGTGATGAATGCGGAGAACGCTC 1432770 32 100.0 35 ................................ GATTATAATCGAAATGCCAATAAGGGTTGTCCGTC 1432703 32 100.0 33 ................................ AGGAACCGGTGCTCTTGCCGGTTCCATTTTGAA 1432638 32 100.0 35 ................................ GATATAAAATCGGGGCATTGGGTAAGATCGACCTA 1432571 32 100.0 35 ................................ GATATAAAATCGGGGCATTGGGTAAGATCGACCTA 1432504 32 100.0 34 ................................ TAACAGTCCAAGCAGAACGTCTTAGAGATTGACA 1432438 32 100.0 34 ................................ TAATAAAGTAGAAATTTCGTCAGAACTGAGAGAC 1432372 32 100.0 36 ................................ AGCCTGACTCTTTAATAAAAGAGATTGTAAAATCCC 1432304 32 100.0 35 ................................ ATATCCATTATCTCCAACGACAGAAACAGATTTTC 1432237 32 100.0 34 ................................ ATTACGATCGTAATCAAAGTGCCAATAAGGGTTG 1432171 32 100.0 35 ................................ TTAATAATATCTGTCCAGAAATTCTGCAGGTCGAT 1432104 32 100.0 34 ................................ GTTGTATCCAAAAACGTCCTTACGCTCTGCAGAA 1432038 32 100.0 35 ................................ ATCAGAACCAAGAGACTGTAAATCAACAGGGAGGT 1431971 32 100.0 35 ................................ GTAGTCGCGTGAAGATGTGGAGGGATCGAAGATTG 1431904 32 100.0 35 ................................ CGGGCTAGCTGTATCCTCGTCTCCTGCAAGCTCTC 1431837 32 100.0 33 ................................ TTTAAATTATTGGCATTTTGGCACTAACCTTGG 1431772 32 100.0 34 ................................ GAGGGGCAGATTCAATAACAGAGAGAATAATGGA 1431706 32 100.0 37 ................................ ATGACGAAGTTTAGAATCTCTGATAAACTCACGATAA 1431637 32 100.0 33 ................................ CCTGTGTCTTCGTTGTACTTTGTCTCAACAACC 1431572 32 100.0 36 ................................ TCTCTTTAGAGCCACAGAGCCACGATAGAGTAGTGT 1431504 32 100.0 35 ................................ GCGTAAAAACTGAGCAAATTGCACTCAAAATCGGA 1431437 32 100.0 36 ................................ CACAAAGCGACCTGTCTATTGTAAGCAGTAGTAGCA 1431369 32 100.0 36 ................................ CTGCAATCATTTCATTTATCATATCAAAACTCTGTC 1431301 32 100.0 36 ................................ CATTGATTACTCTAGAGTGTATACACATGTTGTTTT 1431233 32 100.0 35 ................................ GCAATCTTATTGAGTATCAAAATTCTGAGAAATCT 1431166 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 73 32 100.0 35 GTCGCACCCTTTAGGGGTGCGTGAATTGAAAC # Left flank : GATTATCCCGTATTCCTCATCCAATAGCATTGCTCTATATGTATGTACTAGTAACCTATGATGTACAAACATCTGATCCACAAGGAGCTAAACGCCTTAGAAAAGTTGCCCGTATTTGTAAGAATTATGGACAACGAGTGCAAAACTCAGTTTTTGAATGCCTTGTAACCCCAGCTCAAATGGTCTCATTAGAGCAAGAACTCTCCTCTAATATAGATCATACCTCCGACAGTTTGCGCATCTATCAACTCGGATCGAACTATAAACATAACATTAAAATGATTGGCAAGGAAACCTCTTTCGACTTTGAAGGAGAGTTGTTAATATAGCAACTGCGAACCTCATGCTATCAGTAAAATCCTCTACTATTCGCAACTCTTGATTCTCAGGATTATAACATATTACCGAGCATTATTCGGGTACACTCCTTTTTGTAGTACATTTGTTCTCGCAAAAATGGAGCTATAGTACCTCTATTTATCAAGTCTATAGCCTCCGCA # Right flank : TGTCTTTTAGCCCTTGCAATGTATGCAATTAAATGTCGCACCCTTTTTCCATAAGTACAGAAAAAGGGAACCCCTCTCAAGGGAGCTCGTCGCAGAGCGAGGCATCTTGAGAGGGGCGATTTGTATTCTTATAGGATTGGCGGGATCTTAGGGAGTATTCCCATCCACATCCTCCTGAGGTAACACGCTATCAGTGGGCTGAGGAGTCGGCTGGGCTGCTCCGTCTTGGTCAAAACCACGAGCGGACTCTTCTCCATATATCATTTGGATAAAGCCCATCAGCGTATTAGCTTCGTGGTCTACCACTTTGGAGCCATGGCTTCGTGCCACTTGCAAAGCAAGGCGAGCCACAGAGAAAGTCTCGTCTACTACCCCGTCTCGATAGTGGCGGAAGAACATCTTTTGCAATCGTGAGCCTCCCATCGCAAGGTTCATAAGCCAACGGCTCTTGCGCATATATTTGGCCATTACATCCGAAACGATCTCATCCCCTCGCTGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTAGGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA //