Array 1 111001-111477 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJC03000006.1 Scytonema millei VB511283 NODE_13_length_352380_cov_10.8297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 111001 37 100.0 37 ..................................... GGAACTAAATCTTTGCTTTCCTGCGAAAGAGGAATTT 111075 37 100.0 39 ..................................... ACTGAAAGATTCATAGTTATAGATTGTCACCCGACTAGA 111151 37 100.0 34 ..................................... CCGATCGCGTTGCAATCGAGCGACCGCAGCTACA 111222 37 100.0 35 ..................................... GAAATGTTTCCTGAAGTTTTGAAGTTACTGAGATG 111294 37 97.3 39 ................C.................... TTGCCCGATTGACTGGGAAGGACTTGAAGATGCCGCCGA 111370 37 89.2 34 .....A..........C...G......A......... CAGGAGCCGATAATTACTGCTGCGCCAGAAGTCT 111441 37 83.8 0 ..T..G..T..G..T.C.................... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 95.8 36 GTCGCTATCACCTTCCTTGAATAGGGTGGGTTGAAAG # Left flank : GAATTAGCGATCGCTGCTTACCAATCTCGTCAGCCTCAGTAAGATTGTGTCACTAATTGCACCTTGATAATCAAATATTAATTAACAGCGCCGCAGTTTATGCTTTTTCGAGCCTCTGAGCTGTGAAAAATGTGGGTTAGTTTGACTGTTGTGAAGACGGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCCGATGCTGCTGTCGCAAGACAGGATAGGTGCGCTCCCAGCAAAAAGGGCGCGGATATACTGCTGTAGTGGCTACTGAATCACCCCCGACCAAGGGGGAACCCTCCCCAACTCTTGATTTGCTGAGCTAAAGCGAAGGCAAAAATCCTCTAAAATTCGCGCAAACCTTGAATTATTTATCCGATAAGGATTTTGTTTGCAATCCCCAATATTGGGTATGGCTTGAAAATGATATCTGGGCAGAACATTCAACTAGGTTCGCGCAACCTACGGCTGAAAGTCTTTCTGAACAAACCTTTTAGAAGGGTGG # Right flank : GGTTGGGCTTTTTGTCGTTCTCTCAGTGTACCCGCGTCGCGATTGCCTAGTCAAAAAAGAGTGAGTTGCAGAGCAAACACATCTAAATTCGCTAGAGAATTTACATAAGCCTACGCTATATGTAGACAAATAGATTTTCAACAAAAAGAGATTATTGCAAGTACTCTCAATAGCTCGGATAAAATTTCCTTATTGACGAGATGCTTTTGTCCTGGGTGGGTTGAAAGATATTAATGACGACATCTTGAAAATTATGAAGGCTTGGGTAAGCGGCGATTGCCTACAACAGGATGGGTTGAAAGGAGTATATAAAAATGAAGTAAACCCTGACACGCACAAAAACGTGACTGTTCAGACCAAAATAGGTTGAAAGCCAATTATTGGCTATGATGGCTAAGCTTCTTAATATTACAGTGTTGTAATTGCATATGTAAAAATAACCTGTTCTAGTTCTTACCAAACCATTAGGCAGGTGGAATCGTTCGTAAAAATTACTAGCG # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTATCACCTTCCTTGAATAGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 96890-93555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJC03000007.1 Scytonema millei VB511283 NODE_27_length_236009_cov_10.3157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 96889 36 75.7 34 T.........CCG-.A.GAG................. CGCAATACAACAAAGAAAATATAAGTACGCCAAT T,C [96869,96886] 96817 37 100.0 35 ..................................... ATAAGCAAATTTATCGGCATTCAATGCAGCGTGGA 96745 37 100.0 34 ..................................... GTAATCTGATGGTGGTGGCTCTGCGATCGATGTG 96674 37 100.0 35 ..................................... ATAGCCATCCTTGACTATCTGCTCTATCGTGACGG 96602 37 100.0 34 ..................................... GATTTCTTTGGTTTTTCTGCCAACGAAGCGAGTT 96531 37 100.0 38 ..................................... GGAATCTGGGCTAGGCGAAGGACTGGGAGATGGCGAAG 96456 37 100.0 35 ..................................... CAAAATTGCTTCAGGATTAATCTTTACTTTTTTAC 96384 37 100.0 37 ..................................... TGCGGTGGTAAAAGCTGTCATATTCTCGGGTCAAAGT 96310 37 100.0 40 ..................................... TAAGCGCGATGGATCTCCCGACTATCAGAAATATTTCAGT 96233 37 100.0 36 ..................................... GTAAATGCTGTAGATACAGTTTTAGATATTGTTGGG 96160 37 100.0 41 ..................................... AGTTGGGTTCCCCATCAGAAGCAGTGAAGATTTTACTCTTA 96082 37 100.0 35 ..................................... TTTGCGCTCGATGTCGATTGGCTCACCAGTGATCG 96010 37 100.0 35 ..................................... CGAGCGTGATGCTGCTGTTACTTTATTGCCTGAGT 95938 37 100.0 36 ..................................... ATGGGTGCGGGAGTCGCCTTAAGAGCCAAACAGAAA 95865 37 100.0 36 ..................................... CGTACCGTAAATCCTCACCCAAGCTTTTGTATTACA 95792 37 100.0 33 ..................................... TTGACAGACTATGGCTTGGAGGTTGCCGCAATC 95722 37 100.0 37 ..................................... CAATCTAATTCATCCCCCAAAAGCTCAGCACAACGCA 95648 37 100.0 35 ..................................... TTGCGAAACTTGATGCCTATCTTATCAAAGGAATT 95576 37 100.0 38 ..................................... GGGATCTGGGCTAGGCGAAGGACTGGGAGATGGCGAAG 95501 37 100.0 34 ..................................... TTTGACCTGCTCCCTGAGAATCGCTACATCCTTT 95430 37 100.0 44 ..................................... TACAACGATTATCGGCGCAGCAAAGGATTAGCACCGCGCAGCGT 95349 37 100.0 33 ..................................... CGGCTGTAGCAAGCGAGTATTCTTCGCCGATAC 95279 37 100.0 36 ..................................... GATTTAACTGGAGTTGGAACTAACGTAGTCGTTAGG 95206 37 100.0 35 ..................................... AACGTCAGGTTTCGCTATGCTTACGCCACGATCAA 95134 37 100.0 37 ..................................... GTGCGCTTTGAAGAAATCGTTCAACTCCGTACGCAAG 95060 37 100.0 34 ..................................... AAGATATTCTGAATGCTTTGCACAAATCAGAGAT 94989 37 100.0 36 ..................................... GCGGTAGAATTCAAAGTAATAATTTTATGTGACTTT 94916 37 100.0 35 ..................................... CTCTGCCTTGATACTCAGCTAACACTGCCTCAACC 94844 37 100.0 36 ..................................... CATCACAAAGAAGTAGCTGCGAACGCACCAATTGAC 94771 37 100.0 38 ..................................... AGAATAAAATCTGATGGCGATACTGTAGCTTTGCAGCC 94696 37 100.0 35 ..................................... AAGTTCAAGGTGGCAGGAAATAGTGCCGCTCCTAA 94624 37 97.3 34 ...............G..................... CCGCTTCAATTCTCGCCGAAATTCCCATTCGCGC 94553 37 100.0 35 ..................................... TTCTATCCATTTCCTTGTCGCAGGATAGTTTGGGT 94481 37 100.0 36 ..................................... AAATTTCCTTCAATCCGACAGACGACATTCGAGCCA 94408 37 100.0 37 ..................................... TTATTTATCGGACTCCTTATTTAGAGTTTTTGGAGTA 94334 37 100.0 42 ..................................... ATGACTAGAAACTGGTAGTAAGAACGGCGGATGCTGTTGTAG 94255 37 97.3 35 .C................................... ACGAGGCAGAACATTGCATCTCCTTGCTAATCCAA 94183 37 100.0 44 ..................................... TAGCTATCTCTGTATCACGGAATTAAGCTAAACTGGCTTCTGAG 94102 37 97.3 32 ............................A........ TTGGAAAGTCTCTAATGCAAGCAACGCTAGGG 94033 37 100.0 34 ..................................... TTACTTGCCGCTCTTGGTGCTTTAACTGTAACTG 93962 37 100.0 37 ..................................... GTAAGAGAGGCTTTCTTATTAACCTATCCACAAGGGG 93888 37 100.0 36 ..................................... ATTATTGGAACTATACGACTGGTATTGCGAGAGCAA 93815 37 100.0 36 ..................................... AACAACGCTTCGGGTAGCGGTACGCCACCGCAGAAT 93742 37 97.3 36 ...................................C. TGCAATGAAACTAAAGGAACAGGCTACACAGTGCAT 93669 37 75.7 42 ............CGA.A.T.........A.....TTT TTTTTTCGGAAGTATTGGAATAAGATCGCCTGCTGCGCTATG 93590 36 91.9 0 ...........G.........-.............C. | ========== ====== ====== ====== ===================================== ============================================ ================== 46 37 98.5 36 GTTGAAATTTAATTGTCTCCCTATTAGGGATTGAAAC # Left flank : TGTAGATATAGAGGTAGGTAAAAAGGGTCCAACGAGCGATATTAGTTTGTTCCGCGACCAACAAAAAAAGTTTGAGAATGAGCAAATGTTTGAAGGAGATAAAGCGTATCAAGGAGGAGAGAAGATTACGACTCCTCAGAAGAAACCACGAAAAGGAGAATTAACGACAAAGCAAAAAGAGGAAAATAAAAAATTATCCAGCCGCCGTATCTTTGTCGAACACGTAATTAGACTCGTCAAAATTTTCCGCATCGCTCAACAACGTTTCCCCCTGAATTCTCAAATTTATGAGCAGGTAATTCTTACCATTTGTGGGCTGGTTAGGTTAAGAATTGGCGCGTTAATATTACCAGTTTCATGAAAATTGTAAATTGGAGAATAGTTATGCTTTAGCCATGAATATTTTTACAGATAGTTGCTATTAGTAACTCTCTCAAAGCCTTATGATTACGTCGGTTCTGGTTTCATGCTAATGCTGTGCAAAGCCAGACGTGGACTGC # Right flank : TAGTACAGACTGGACACTCTCAATGCACTACCGACGATTTGGCAAGACGAACCTCAATCTTTCGGCGTTTTCGTTAGGCACGATGCGTTACTTGGCTTCAGAGGAAAATGCCTATCAAACGATCGATCGCGCAGTTGCACTAGGCATCAATCACATTGAAACAGCTAGAGGCTATGGTGACAGCGAATTATATCTGGGTGCAGCACTCAAAAAAGGTTTATCCGTCCCTCGTTCCCAGCTTCTCATCACAACCAAAATTCCCCCTACGACAGATGCGGACTCAATGCGTTGTTATATCAATGAGTCTTTAGAACGTATTGGAGTCGATTATTTAGATTGCTTAGGAATTCACGGAATTAACACTTGGGAACATCTCGATCTCGTACAACGATCGCATGGTTGTATGCAAGCAGTACGGGAGGCTGTTGCTGATGGACGGGTAAGACACGTTGGTTTTTCCACGCACGCACCTTTAAATGTGATAATAGCAGCGATCGCCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTAATTGTCTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 100073-97987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJC03000007.1 Scytonema millei VB511283 NODE_27_length_236009_cov_10.3157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 100072 37 97.3 41 ..............................G...... TTTTGGTGACAGTCTGCGAGGAGGAATAGTAGGTACTGGTA 99994 37 97.3 37 ..............................G...... CTATTAACTGATTAATTGCCAAAAGCTGCGTGACGAT 99920 37 97.3 35 ..............................G...... AATACTCAAAGGCTGCCACCATCAACTAAAGCTCG 99848 37 97.3 38 ..............................G...... CTATTAATTGATTTATCGCTAAAAGATGCGTGACGAGT 99773 37 100.0 34 ..................................... CTTAATGCAAACTACGCTAGGGGCTTTAAGAGGA 99702 37 100.0 35 ..................................... AATTGTGTCTCTAAAACGGTACTTTTGAAACACTA 99630 37 100.0 35 ..................................... TACAAAGATAAACGCTGGATAGGCAATTCTAGAGT 99558 37 100.0 37 ..................................... AATGAATTCAGCAATACCAGTCAAGCTGAAGATAGGA 99484 37 100.0 38 ..................................... AGGTAAATAAGTCAGCAATATGCGATGTGGATTAAAAC 99409 37 100.0 33 ..................................... CAACGCTGCGGCTTTAGAGCTAGCCAGCGCTAA 99339 37 100.0 37 ..................................... CTGTAGAGGTAGAGATTAGCCAAGCCATGCTTCACCT 99265 37 100.0 38 ..................................... GAATTGATTCTGCTTATTAGCTTTACTTCCTAGCAATA 99190 37 100.0 38 ..................................... AGCAATATCAATCCTAGCAAGGTAGAGAGAATTCTACA 99115 37 100.0 38 ..................................... ACGTTCCCAAAGCAGGTGGCAAAGCTCGGATTTGATGG 99040 37 100.0 38 ..................................... ATATATGCTTATTTAGTACGGATATCTATATATACAGG 98965 37 100.0 34 ..................................... GAAATTACCCCGGTTTTAAATTCATTGGGAACAA 98894 37 100.0 34 ..................................... GGTAGCGGCGGGAATAACGGTTAGCGGTGAGCAT 98823 37 100.0 33 ..................................... TTAAACCTTATTTCTGGAAGTTGGAAAACGGGA 98753 37 100.0 33 ..................................... TGTAAAGAGTATCGTCAGAGCTAGGGGAATTAC 98683 37 100.0 35 ..................................... ACAAGGGACTAGCAAGAGAAATTTCAGCATTGACT 98611 37 100.0 38 ..................................... AGGGCGATCTCTCAAGCATTTGATTGATACAGTTGATG 98536 37 100.0 34 ..................................... GCGATAAATTACTTTTGGTGGTGTTGAGACTGTG 98465 37 100.0 34 ..................................... CGTCCCACGCCTGAGTTAACCGCCCAATCAAAGT 98394 37 100.0 36 ..................................... GTGTTAGCAATTGTTGATGTCGCCCCACGGCAATAA 98321 37 100.0 36 ..................................... AGATTGCAATTCGAGCGATTAATCTGTACAAATGGC 98248 37 100.0 41 ..................................... ATCACGATATGCACCCGCTCTAGCTCAGGGGCGATCGCGAT 98170 37 100.0 34 ..................................... TAGCATTCTCAAACGCAGATTGTAGAATTCTCTC 98099 37 100.0 39 ..................................... TTAGGCAGATTTATGATTACACTACTAGTTGTTTCCCAC 98023 37 75.7 0 ...........................ACC.GTCCGG | ========== ====== ====== ====== ===================================== ========================================= ================== 29 37 98.8 36 GTTGAAATTTAATTGTCTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTATCGTCTCCTACGATATTTCCGAAGATAAGCGCCGTACCAAAATCCATAATATTCTTAAGTCTTACGGGCAATGGGTGCAGTACAGCGTGTTTGAGTGCCAGTTGAGCGATACTCAATATGCTAAATTGCGTTGGCGTTTAAATAAGTTAATTAAGCCGGATACTGATAGTATTCGATTTTATTTCCTATGCGCCTGCTGTTTTGGTAAAGTTGAGCGTATTGGTGGTGAACCAGTTTATGATGACACTGTTTTCTTTGCTGAGTGCGCGGATGGGTAGGTGTTGGTACGGAGAGTTTGAAAAAAGATGCTGGAGGTCTTACGATTCAAAAGATTACAGGAATAATAGCTGAGAACCTACCGCGCTCTTTGCTACAACTGGGTTTTAGCAATTTGTACCATGCATTAACCAGCTTTTGTCATGCTATTATTGCTCTATCCGCGCTCTCGAACCTTGAAAACTACATATGGATTAGTTTTCAGGCTTCAGCC # Right flank : AATATTATTTAAGTGCTAAAAAAATGGTAGAACGAAATTTTGTCGCTCTACCACTATGAAAAATCCTCTTGATTATATCCAAGAGAATCCGCATCGGACAAAGCAAATACTGGGAATTACACATGACCAGTTTCGAGACTTGTTGAGCCAAGCTCAAAGGCATCATCAAAACCAGCAAGTAGACAGAGAAAGTAAAAAAATCCGGATAAATCAGAAAGGAGGAGGACGTAAACCGAAACTCAATGTTTCCGAGTCGGTATGTTTGTGTCTGTTTTATTTAAGACAGATGCCAACGTTTGAGGTTTTAGGGATGCACTTTGGGGTGTCAAAAACTGAGGCAAATGATACGTTTCATTACTGGTTAAGAATATTCCGAAAAATTTTACCTGCCAGTCTTCTTGAACAAGTTGAAGAAAAGGATGGTGATTACGCGATTGCTTTAGAATTATTGAGGGAATTTCAGTTAATAGTAGATAGTATGGAACAACCAAGAGAAAGAC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTAATTGTCTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 1467696-1469964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJC03000001.1 Scytonema millei VB511283 NODE_1_length_1697822_cov_11.193, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 1467696 36 97.2 46 .................A.................. TCACGTATGTAAAGACGCGCTCCATCGCCCAGTTTTCGCAGAAAGT 1467778 36 97.2 38 .................A.................. GCAGACCTAACGGTCAAAGCCGGTGACGACTTGTTTCA 1467852 36 97.2 37 .................A.................. CAGACGAAATCATTTTAACCTTATCGGAAGATGGTAG 1467925 36 100.0 41 .................................... TTCCTTATTATCTTGCCAAGATTGCGGACAATTAGAGCTAA 1468002 36 100.0 39 .................................... TATTTTGGATACAATTGAGAAAATTTCAATGTATCTCTA 1468077 36 100.0 37 .................................... TTACTCACTACGACAAGGAGAAAACTAAGTGGTGGGT 1468150 36 100.0 40 .................................... CTGGTGTGAGCGATCGCACTTGGCAGAGTTTAGTTACTCT 1468226 36 100.0 37 .................................... ACCCTTTTTTCTATACTTTGGTGGACGAGGCTTATCG 1468299 36 100.0 37 .................................... TCATCGAACACCGCATATTTCGCGGTACATCTCACGG 1468372 36 97.2 36 ...........G........................ TTAAAGGACGGGGTTTCAAACCCATTTTTTCGATGA 1468444 36 100.0 34 .................................... TCGATAGTTTTGGACTGCGCTGGATAGAAATCGA 1468514 36 100.0 35 .................................... ATTGTTTATCCAACTTATGAAGATTTATCCAATCG ACCTTT [1468534] 1468591 36 97.2 36 .................A.................. CAATGCTGAGATAGCAGAAAAGTATTACCCTGGTAA G [1468622] 1468664 36 94.4 39 ....T............A.................. ATGACTGCCACACAAAGCGCAGGGAGCAGAAAGAAGCAC A [1468695] 1468740 36 86.1 38 ....T..............TT.............GA TACCTCGCTGGCTACTGCAAGGGCATCTAGCAGATGTG 1468814 36 86.1 44 A..........G.....A..T..T............ CTGGACTTTCGCTCCGATCCCGAACTAGAGAGCAAGCATTTCAG G [1468844] 1468895 36 94.4 35 ....T....G.......................... GAAATAGTCGATACGTTCAACAGATTTTGTGAAGA 1468966 36 97.2 40 .................A.................. ATCTGGGAAGTTTCAAGGTCATCATTTATGGCGCTTACAA 1469042 36 91.7 36 A........G.G........................ AAAAACTGAAGACTGTAGCCGCTATTGCAAGTATCT 1469114 36 97.2 40 .........................A.......... GCTTTCTTAATAAGGTGGGAGCTGTCACCATTAAGGCGAA 1469190 36 94.4 41 .................A....T............. CCGATAAATTTGCTCAACCAAAAGCATGTAGATCGGTACAA 1469267 36 94.4 40 .................A.........T........ TTTCGAGAAGTGACGGACACTCTGGAGGTTACAAATACGT 1469343 36 91.7 35 .................A...A...A.......... AATTGAGAACAGATCGCGATAGGTGCTGTGAAGTT 1469414 36 100.0 41 .................................... CAAACAGTTCGTCAACGGATTAAAAGGCGAACGGGTCGCTA 1469491 36 100.0 37 .................................... ATGAAGTATTATTTTAAGGGAGGATTATGAGACCAGA 1469564 36 100.0 35 .................................... GGTTTGAGCAAATACGGTGTCGGCTACAACTTTAG 1469635 36 100.0 40 .................................... TTGAAACAGCCAAGAACTTAACAAATAAGTAAACTTTTGG 1469711 36 100.0 36 .................................... CAGACAAAACTTGTACGATACGGACTACGTAGCGTG 1469783 36 100.0 38 .................................... TTAACTTGCTACGCAACAACTTTGGACTGAGCCTAGCT 1469857 36 100.0 36 .................................... TTAATATCGATGGCTGCACATCATCGAGGAGAGGTT 1469929 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 31 36 97.2 38 GTTTCCAACAAAGCGACTTCACCCTGTCGCTGGGAG # Left flank : GGTAGGTGGGAGCCAGTGGGAGCAAGCTACTACAATGGCGAGTTCCCAACAAAACGACATCACCCTATCGCTGGGAGGCTACTTTAATTAAATGCGATCGACAGTACAATTGCATTGAGTTTTCAACAAAGCGACTTCTCCCTATTAATTTGCTAGTTGCATGAGTTGTGGAAGTTCTTTACCCTCTTCTTGAAACTCTTCAATCAGCATTTCTAGTACTTCTTTAGCATTGGAAAGAGCTTCTTCATAAGTTTCACCATGAGTTGCAGGTTGATTGGTAAAATCTTTGAATTCTGGTAGGTAAACTACGTAGCAGTTATCTTCTTCACTCCAGTGAATAGTAATGGTAAATTTCATTCTTCATCCTCCTGCTTTGTTGATTTTATGGCAGTTCTAAATGATTTGTAGAGCAGGCTGCTAGCCTGCTCTACGTTCATAAAGCAAAACCCTTGTCGCTGGGAGATCCGAGAGTATATCGAGTCTATTTGTGCGGCGGAGCA # Right flank : GTCTTCTTTTCAGAATCCAGACCCAGCATAGCATCCACAACCCGATCGCGAAGGTTACGCTTGCCAGCTTCAGAAAGTGACAAATTTTGACCAACCAAATTACTGAAATCCTTACTAGACAAACCATCGAGGCTCAGAACAGTAGAATCGGCTCCACAGCAATTCCGGTTAATCTTCGCAACACAACCATACATAAATTTTTATCAACAAAAACTGTTGCAATACTTAGTAAAAAATAACAGATTTAAATAAAAAATTTACCCCAACAGAGAAATTTTCGCCGACTTCAAGGGAACTATTAGGAAAGTCAAGTTTTAAAAGTAGGTGAATTCAACTCAATCGATCTTCCTAAACATCCTTTAAATCAAACAAAAAGGAAATTTTGCTCTCCCAATCATCCGCATCTGAAAAGATGACAGACACCATCTACACAGCAATTACTTTCGCACCCGTTCAGGCTTTTATTGAAAAATCGCGCAAACTACGCGACCTTTATGGTA # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACAAAGCGACTTCACCCTGTCGCTGGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.30,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //