Array 1 160281-160850 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADTWL010000006.1 Serratia ureilytica strain SER00195 SER00195_c0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 160281 28 100.0 32 ............................ ATACCGTCTACGCATATGCACTTACGAAACCC 160341 28 100.0 32 ............................ GCGAGATGATTTCGTTATCGTCGGGGATCGTG 160401 28 100.0 31 ............................ CAAAAACGGGAACATTACCAAAACGGGATCG 160460 28 100.0 32 ............................ TTTACATGTTCTGCGGTAGCCGGTTGGCGTCC 160520 28 100.0 32 ............................ TCATCGGTGTCATCCAGTGCCTGGCTGATTGC 160580 28 100.0 32 ............................ TGGGTAACGATCCAATCCGGCCATTACACCGC 160640 28 100.0 32 ............................ CGTTCGAATTCTGAGCAACTGCTGCGCTACTG 160700 28 100.0 32 ............................ GAGCGCGTCACCACTTCTTCGCAGTCAGGCAC 160760 28 100.0 32 ............................ TATCATGAGCTGGCGGTGGTACGTAATTATCA 160820 28 96.4 0 ....................A....... | A,A,T [160840,160843,160846] ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCGGCCTATTACGGCCGCTTCGGTTTCAAACCGGCCGCCGCCTATGGCCTGAATTGTCGCTGGCCGGACACGGAAAGCGCATTCCAGGTGTATCCGCTGGCGCAAGACGCTCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCTGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTGAACTATTCAGTTCATCTGTCGTGTCTATGCGTCGCAGTGAGACGGATGGTGATACCAAACAGGAGCCTATAATTCCCCCCTAAAATGTAGAAATGTCACCTTACTCCATTCTTGGTTGCTGAACCCTTTTTTGAAGGCAATTTCTAATTGATTGATTTAAAATCGTATTTTTAAATGCTTTAAAAAAGGCTTTTTTAAAAGATATGCCGATTTTCCTCCAACAATCAGCTGATTAGCGCTAAGATTCAACG # Right flank : AAAGTAATATGTATTTGGCACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGGATATTGACTCGGTTGCAACGGATTTCCCTGTAAAAACGTGGTAGAACGTTGGTGTTGCCTGCATTGATATGCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATAAAACAATGAAGAATGCCCTTTCCTCCTCTGAATTAAAAACGATACTGCATTCGAAGCGAGCCAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGCGTCGAATATGTCACGGATGAAGGAAAACAGTCCCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGCGGCGGCGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 169327-171392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADTWL010000006.1 Serratia ureilytica strain SER00195 SER00195_c0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 169327 28 100.0 32 ............................ AGAAGGTGACGCTGGTTCTGGCGTAATCCCCA 169387 28 100.0 32 ............................ GCCATCGCTCATTGACTCACCCGTTGCGCGGA 169447 28 100.0 32 ............................ AAAACGCCTCGGCGTGGCCAGTGTCTTGGCTA 169507 28 100.0 32 ............................ TGTCTGCCTGCAGCACGCGATCGCGATGGGCA 169567 28 100.0 32 ............................ AACTCGCCCAGGTATGTCGCAAGTCATGAAAA 169627 28 100.0 32 ............................ TATGCGTAGAACTCCAGTTCCACCACTTGAGT 169687 28 100.0 32 ............................ GGATGACTCCCGACGGTGCGGTAATGCCCTGC 169747 28 100.0 32 ............................ CGAAGGTTGCCGAGCAGCTGGCCAGCATTGCG 169807 28 100.0 32 ............................ AGCAGTAGCACCCACCGTGGCACCTATAACTC 169867 28 100.0 32 ............................ TTGGTGGAGGTGCGCCAGGTAATTTGCACATC 169927 28 100.0 32 ............................ AATGCGAGAGGCGGTAAACGTCGTTAAGATGC 169987 28 100.0 32 ............................ ACTGGCAATAAGTCGGCCTTTCACGTCGATTT 170047 28 100.0 32 ............................ TTTACCACCGCGGGATCGATCCTGGCAAAAGG 170107 28 100.0 32 ............................ GGCACGCTGGAAGTGCAAAAAGGCGGGGAGAT 170167 28 89.3 32 ..G.........AC.............. GTGGGTTGGCTCCGGCCAGACGATCGGCTTAC 170227 28 85.7 32 ..GA........AC.............. TGCACGGTTTTGCAGCCGTGGGCGCTGATATA 170287 28 89.3 32 ..G........CA............... ATTCCCGCTTTGCTGGCGCGCCGGTCGATAGC 170347 28 92.9 32 ............AC.............. ATGCGGCGCTGGTCAAAGTCGTTAATGTCGTC 170407 28 89.3 32 ..G.........AC.............. CTGCGCACATTCAGCGAAATGTATCTGTCGTT 170467 28 96.4 32 ............A............... CAACCCCCCGGGCGCCATCATCCGCGCTGTGA 170527 28 96.4 32 ............A............... GGCACCTACATCATGGGCTACTTCAACACCAC 170587 28 96.4 32 ............A............... ACTACAGCACGATGACGCTGCAGGACTTGAAA 170647 28 92.9 32 ...........CA............... AAGGGGTAATCCATTAACCAACAACTGAACAT 170707 28 92.9 32 ...........CA............... AAGGGGTAATCCATTAACCAACAACTGAACAT 170767 28 92.9 32 ...........CA............... ACGGATAGAAGTGGAAGCGGAACTCTTTGTTC 170827 28 92.9 32 ...........CA............... ACCTCGATTGATGCGCGCCTGGTGCAACTGAC 170887 28 92.9 31 ...........CA............... TTTAAAAGGCATAAACTATACTCCCTGCATA 170946 28 96.4 32 ............A............... AAGGGCTTCGAATTCTCGCCAAACTCCGTGAC 171006 28 92.9 32 ............A.......T....... AGTCGATGCACTCGGCGGCGGTGCGGTATGGC 171066 28 96.4 32 ............A............... TGGTAGCGATAGAGTGATTCTGTGCCGTTGCG 171126 28 96.4 32 ............A............... TATCCACAACAAAGATGCTGCTACTCAGCCTC 171186 28 96.4 32 ............A............... CGCAGCCAGGCGCCGGGCCGCCGCTGAAGTTG 171246 28 96.4 32 ............A............... GGGCTGATTATCGACGGTAATTGCTGGTACGA 171306 28 96.4 32 ............A............... TTCGGCGGCCGGCCGCGAGCGTCTTGCCATCA 171366 27 78.6 0 ......C.....CC......-..C...T | ========== ====== ====== ====== ============================ ================================ ================== 35 28 95.7 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : TGCGCTGACGGCGCTGGGGGGATTCGACTGGCTTAAAGGACTGCGGGACTATACCGACCTATCGCCCATCCAGGCCGTACCTGCTGAGACGGCGTTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGTAGCGTAGAGCGTATACGCCGCCGGGCCGTCAATAAAGGTTGGCTGACTGAAGAACAGGCATGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCCTTTATTGCCTTGAAAAGTCTTTCCACCGGACAACATTTTCGCTTGTTCGTGAAACTGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTTAGTTTCTATGGGTTGAGCGCGTCCGCTACGGTGCCTTGGTTTTAACCCTTTTTTTTCGTTCAGAGGTAACGCATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGTATTTGCCTGTTGTTCTTTAATAATCAGATCGTTAGTGAATTTTTTGTTCT # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACGGGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAGCTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGTAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCGTCACAATCCCATCCCCGGCCGCCGGAGCCTTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACAATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //