Array 1 174825-177172 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFU01000003.1 Micromonospora craniellae strain LHW63014 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 174825 29 96.6 32 ............................G GCGACCTCGTGACGACCAGTGGAGCATTTTTA 174886 29 100.0 32 ............................. ATCCTGGCGACCCCATCGTTGCCGTGCGACTC 174947 29 96.6 32 ............................G CGTCGCGCCGAGCTGGCTGGACGACCCCGAGT 175008 29 96.6 32 ............................G CTGCGACCGGCGCCCCGGTTCCGCAGGATCAC 175069 29 100.0 32 ............................. ACCCACCGCAGCCTGCCCCACAAGGTGGCGGG 175130 29 100.0 32 ............................. GACACGTGGATTCAGTGGGCGCGGCCCGTCTG 175191 29 100.0 32 ............................. TCCAGCGGGAGCTGGCCCGCAACCCGCTCTGA 175252 29 100.0 32 ............................. TTCACAGTCCGTGCATCATTCGTGCCTTCCGG 175313 29 100.0 32 ............................. CCGACGGTCGTCTTCGTGTGCCAGGAGAAGGA 175374 29 100.0 32 ............................. AGCAACAGCAAGCCGTTCCGGTTCCACTACAG 175435 29 96.6 32 ............................A GAACGTGGCCCGAGGTCGGCGAGGTCTCCGCC 175496 29 100.0 32 ............................. TGCCTGCGTTGCGCCTTGCGCGCGTAGTAGAC 175557 29 100.0 32 ............................. GCTAGGCGTTAGGTGTCAAGCTCAGGGACTAA 175618 29 100.0 32 ............................. CGCACCGGCTGGGCCAACAGCCTGTACGACCG 175679 29 100.0 32 ............................. GAGCGCGGTGCCGACGGCTTCGGAGGTGCGTT 175740 29 100.0 33 ............................. CTGGCAGCACTGCGCCCGGATGGCGTTCGTGGG 175802 29 100.0 32 ............................. ACCACCGTTCCGGGTACGTCTGTGCTGGAAGT 175863 29 96.6 32 ............................T CGTTCAGCCGTACATGTTCGGACACCCATGGC 175924 29 96.6 32 ............................G TCGGGCATCGCCGAAAACCGGCCGATCAGCAC 175985 29 100.0 32 ............................. TGTGCACTTCGATGACAAGGGACGTCGCGCTC 176046 29 100.0 32 ............................. TTGCGGAGGACTGGCGCAGTGGCAGGAGATGG 176107 29 96.6 32 ............................G GGAAAGAAGCGTCCCGACGGTTCAAAGGGAAT 176168 29 96.6 32 ............................T CCGTACCCCCAAGGGTAGGGTCCGGTCCCTGG 176229 29 100.0 32 ............................. CGGTCAGCTTGAGGGCGATGAACACGATGGTC 176290 29 96.6 32 ............................T CGGACGTCGTCGGCGATGTAGGCGCTGCGGCA 176351 29 96.6 32 ............................T CTCGGGGGAGATGGTGTCGAGGATGGTCGTCT 176412 29 100.0 32 ............................. ACCACCCGCTTGCGCCTTTGGGGAACGCCGAA 176473 29 100.0 32 ............................. ACCACCCGCTTGCGCCTTTGGGGAACGCCGAA 176534 29 100.0 32 ............................. TACAGCGCCTCGACGCGATGTGGGCCGACGCC 176595 29 96.6 32 ............................G TGGTCGCAGGCTGGTGGAGCCAAGGCCAAGCC 176656 29 100.0 32 ............................. TTCCAGTGGTTGGCGGCCATGCGGACGCGGAC 176717 29 100.0 32 ............................. CCTGACCACAACGCGCAGACCGCGTACCGGGA 176778 29 100.0 32 ............................. CCTGACCACAACGCGCAGACCGCGTACCGGGA 176839 29 96.6 32 ............................G ACGGTCGACGGTTCCCGTGACTACCGGCATCT 176900 29 96.6 32 ............................G ACGGTCGACGGTTCCCGTGACTACCGGCATCT 176961 29 100.0 32 ............................. GTGACGCACGCTGTGGACGGTGCCCCCGGCGT 177022 29 93.1 32 ......T.....................G AAGGCGAGTACGACCACGTCCTGGGCAAGAAC 177083 29 93.1 32 .....................G......A GATCAACTCCACCTGGCGCAGCGCGAGCAGCG 177144 29 79.3 0 ......T............A.G..GGG.. | ========== ====== ====== ====== ============================= ================================= ================== 39 29 98.0 32 CTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : GTCGCTGATCGCACTGCCTGCATGTCGCCGCTGGCCAGTTGTTCGCGGCCGTTGCGTCGTTTGGTCAGCAGCCCGGCTCTTTCCAGCACGGCGACGTGTTTCTGTACGGCGGCGAAGCTCATGTCGTACTTGATGGCGAGTGTCGAGATGGAGTGTTCTCCGGCCAGCACGCGGCGGAGGATGTCGCGTCGGGTGCGGTCGGCGAGTGCGTGGAACAGGGTGTCTGCCCGGTCCTCATTCGTCTCCGTCACCAGACGACCATACAACCATCCGGTTGTACGTTGCAAGTGTTTCCACCCGCCAGCGGCTTTCGGTCACCCCGGTGGGATCCGGGCTGCGCGGGCATGGCGAGACGTGTTCGGCCGTCGAGGCGCGTTAGGCTGACGGCGGCCTGCGAGATGCTCATCCGGCCTGTCCGTCCGAAACCGAAGGGCATGATCTTGAGAGTCGAAGTGAAGAGAAACGGCAAGGTTGATCTTTAGCGCCGCAGGTCAGGAAGT # Right flank : CACCCGGGAGTTGGGTGGGCCAGTTGCCGTGGGCTCGCCGGGGCGGTTACGGCGATGGGACGGCGGGGCTCTCCGCAGGGCGGTCGTGCCGTCGCCGCAGCGTCCGCGCCACGACCACCGGCAGGACGCGTAGTACGAGCGCCAGTATCAGCGCCAGCGTGGCGGCCTGTCGCACCGACAGTCCCTGCCATGCCAGCACCGCACCCGCACCCACGCCGGTCAGCAGCGCGCCACGTACGACGCGCAGCGTGACGACGAGACTCGTGGGCTCCTCCCCGTCCCGATCGGGCCTCGACCACAGGGTGCTCACCGCTGCCGTGATCGCGAACAGCACGGCGATCAGCAACGCCCAGAGGGCGACCCGGCCGACGCCGGCGTCGTCGGTCAGCGACGGTGCGGCGAAGGTGGCCGCGGTGAGGATGACGAACGTCGGCGGCCACGTCAGGACGAAAGCCGCCAGCCCGGTCTGGAGCGCTCGGCGACCTCGGCTGACCTGCGGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1377-615 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFU01000064.1 Micromonospora craniellae strain LHW63014 scaffold64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1376 29 96.6 33 ............................T CTCCGCCATGGACTTTGCATTGTGCTTCGGGTC 1314 29 100.0 32 ............................. GGCTTCGGCTCCGGACGCGGCGGCGACGGTGC 1253 29 100.0 32 ............................. GCAGCCGCACGATGCTGTTGGCGCCGGAGGTG 1192 29 100.0 32 ............................. GACGCCCGACCGATCCTCGGCGACCTCGTCAC 1131 29 100.0 32 ............................. TGGGGACCAGACGAGCTGTGCCCCAAGGTCGT 1070 29 100.0 32 ............................. GTGCACCAACCCGACTACCACTGGGCGCCACC 1009 29 100.0 32 ............................. TTCACCAGCCGCAGCGCGTTCACGCTCGGCGG 948 29 96.6 32 ............................T GAGCAGGTGACGACGGCGGCGGCGGCGAAACG 887 29 96.6 32 ............................T CTGCGCTCCCGGCGGGGGCATTGTCGCTGTAG 826 29 100.0 32 ............................. CGGGACGGGCACGGTTTCGCGATCGTGGTCGG 765 29 96.6 32 ............................G GTCCGAGCCACCGTGGACGATGCCCCGTTCAT 704 29 100.0 32 ............................. CCGCAGGCACGGCAGTGATCGGCGTCGTACCG 643 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.0 32 CTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : TGTCGCTGATCGCACTGCCTGCATGTCGCCGCTGGCCAGTTGTTCGCGGCCGTTGCGTCGTTTGGTCAGCAGCCCGGCTCTTTCCAGCACGGCGACGTGTTTCTGTACGGCGGCGAAGCTCATGTCGTACTTGATGGCGAGTGTCGAGATGGAGTGTTCTCCGGCCAGCACGCGGCGGAGGATGTCGCGTCGGGTGCGGTCGGCGAGTGCGTGGAACAGGGTGTCTGCCCGGTCCTCATTCGTCTCCGTCACCAGACGACCATACAACCATCCGGTTGTACGTTGCAAGTGTTTCCACCCGCCAGCGGCTTTCGGTCACCCCGGTGGGATCCGGGCTGCGCGGGCATGGCGAGACGTGTTCGGCCGTCGACGCGCGTTAGGCTGAAGGCCGCCTGCGAGATGCTCATCCGGCCTGTCCATCCGAACCGAAGGGCATGATCTTGAGAGTCGAAGTGAAGAGAAACGGCAAGGTTGATCTTTAGCGCCGCAGGTCAGGAAGT # Right flank : GCGGCCAGCACGGGCGACACGCACTCGGCGAGCGCCAGCTGCTCCCCGTGTTCAGTCGGTACCGCACTCGTCTATCGGTTTGCCATGGTCAGAGCGCGCAGTTCATCCAAATACGAGACGACCTCACTCTTATCTGGACAGTGGCTGGCCAACGTATCCGCCAACTCACGCGAGCACATCAAGAGAGACGGCAGCGACTTCCGGTCGCCTTCGAGGGCTCGGCGTCCATGGGACAACGCTGCTTCGATATCTCCATCCCGAGCCGCTGTGACACCCAATGTCACCCAGGCTTCCGCAATCCGCATGGGCTTGCGAGGGATTCCGTGCGGGTCGGTCGAGGAGTTGATGACCTCTTGGGCGTACATCAGGGCGTTCGCAAGGTCGAGGTATGTCCGTTCTAGACGAGTAGTTCCGAAGTCAGGGGTCGATGTCTGGGCATGAAGAGAGGGCATCCAAGATCATGGTGTGACGCAAGACCTGGATACCCTCTTGACCGCACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15652-17513 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFU01000064.1 Micromonospora craniellae strain LHW63014 scaffold64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 15652 29 100.0 32 ............................. GAGGCAGAGCAATGGAACCGAAGACCGTAACT 15713 29 100.0 32 ............................. GGCTTGGCGCCATACCGAACCCGCACCACGTT 15774 29 96.6 32 ............................G GTAGATGGTCATTGGATGGGCTCCTTCGCGGG 15835 29 100.0 32 ............................. TCGACCGCCAACACCTCCCGCGCCCGAGGCGA 15896 29 100.0 32 ............................. ATCACCCCGATGCGTCGGCCCCGACTGCGGGC 15957 29 96.6 32 ............................G GGCGAGGTGTTCAAGCCGGGGGTGCTGCTGCG 16018 29 96.6 32 ............................A CGATGATCACGTACCTGCACGAGTGGGAGCTG 16079 29 100.0 32 ............................. TCGTGTCGATCACCGACCTGCTGGCAGCCCGC 16140 29 96.6 32 ............................G GCCGCACTGGACAAGGTACTCACCGACCCGAG 16201 29 96.6 32 ............................G CTGGGCCACGAGATCGACGGCGACGGCGCGTA 16262 29 96.6 32 ............................G GCGATGGTGGTCATGTGGACCGGCGGCAACTT 16323 29 100.0 32 ............................. TGGTCGGGCAGATGGTCCGCGACTCCCGACGC 16384 29 100.0 32 ............................. GGGCGGAGTTCGAGTTGGCCGACAGTGTTCCC 16445 29 100.0 32 ............................. GAGATGCGGACCATCGCCGCCGACCCCGAACT 16506 29 96.6 32 ............................G TCGTACGCGACGCCCCGATCTGCCATGTGCAG 16567 29 96.6 32 ............................G GCGGCGGCCCGATGAGTCCGCGCAAGGCCACC 16628 29 100.0 32 ............................. GCGGGCGACGACCGCAGCGTGGTGCTCAACGC 16689 29 100.0 32 ............................. TCGGCGCGCTGTCGGCCCCGGCTACTGGTGCG 16750 29 100.0 32 ............................. CGCCTGATCAGGGCGTGTGCGACGGCTGGTGT 16811 29 96.6 32 ............................T GCGACACCGCCTACGCCCCGTCGATCGAAGAG 16872 29 100.0 34 ............................. CGTCAGGACTGACGCTTCGCCTTCTTGCCAGCCG 16935 29 100.0 32 ............................. CAGTTTCCTCACGAGCTGTGGACGGAGCTGGC 16996 29 96.6 32 ............................T GTAGCCGCGCGACTCGTGGTGTGTCCAGAGGC 17057 29 96.6 32 ............................T CCGTGTGGCCGCCCGAGGTGGTGTAGTTGACG 17118 29 100.0 32 ............................. GCACTCGGGGGCTTGGCTGGCTCGCGGTATGC 17179 29 100.0 32 ............................. ACAACGGGCTCGCCTTCTTTGCCGAGCCCGAA 17240 29 96.6 32 ............................G TCCAGATAGACATTGTGGTCCGAGACGCCCAC 17301 29 100.0 32 ............................. ACGCAGGCCGTGGTCGGTCAGGACGGCTGCTA 17362 29 93.1 33 ..................A.........G CTGCCGGGCTACGTCCGCTATGAGGGCGTGCCC 17424 29 100.0 32 ............................. GTGGTCGGCTCCGCCGCCTCCCACTCCGCGAT 17485 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 31 29 98.5 32 CTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : CAGTCGGATTCGGGACCGGTTGTGGGCGAAGGTCGTCGAGATGGCTGGGCCGGGCCGGGCGCTGCTCGTCTATGAACAGCCGGGTGAGCAGCGGCTGGGCTTCCATGTGCACGATCATCACTGGCAGCCCGTGGACCTCGACGGAATCGCCCTGATCCGCCGTCCCACCGATCGTGCGACGTACAACCCCGCCCTGCCCCGGGGCTGGAGCAAAGCCGCGAAACGTCGGCGCTTCGGACGCCGCAACTCGGGCGGCCCCGTGGGGACGGACCGAAGCCGTGGCGAGACGGATTCGTAAGCCCCGGTCGGCCAGCAACCAGCCCCATGGAAGCTGGAGCTGCGCCCACCAGCCGACGTCGGCGGTACGATCCAGACGCGTCGTGCCCGTGCTGCCCCGATACCGTGAACGGCCCAACTTCCGTACGAAGGAACTGGTGATCTTGAAACGCCGAGTGAATAAAAACAGCGCACTTGATCTTTAGGGCCGCAGGTCAAGAAGT # Right flank : CGCCTGCCCTGTCTGCGGGTTCCGCAGCGGTGCCAGACGATCTCCACTATCACCGACAAGGTGATGGACGCCTTGTTGTTGACTGTGCCAGCGTCGCTCTGAAATCCGACCGTGCCGATGCTTGCACGGCGGTTGCAGAACAACTCGCTCAAGTCGTTCGTGCGTGGCGGTATACGTGGGTTCGGTGCCAGTCGAGGTAGGCGCGCTGGGGTGGCAGGGCGTCAGCGGGCAGGAGGAGGCGTTCGGCCAGGGGTGGCCGGCCGAACGCGGCGTGTAGGGCTGGGTCGGTGTCGATCTTGCGGTGCAGGTCGGTGTGGATGTGGATGCGTAGTCCGCCGTTGACGGTGAGCAGACCAGTGTCGAACGCGACGTCGTGTGTCGGGCAGGCAGTGAGGCCGTTGGCGACGTCGAGGCGTTCGCGCGGGCCGCTGTCCCGCCACGGCTTGATGTGAGAGGCGACGAGCATCCGCGGTGCCCGTCGGTCGTCGACGGTCACTGAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 82256-86346 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFU01000020.1 Micromonospora craniellae strain LHW63014 scaffold20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 82256 36 100.0 39 .................................... TAGGGCCGCTCAGGCGTTCCAGGACATCGGTAGGAAGGC 82331 36 100.0 34 .................................... TGGTCTGCCGGATGCGCCACACCTCACCGTCCAG 82401 36 100.0 38 .................................... ATGGAGGCGAGCACCAGCACCAGGGCGTTGAAGTCCCC 82475 36 97.2 36 ...................................G GGGATCGGCGCCGGGCGGGTAGCTGCCGCTGGGCGC 82547 36 100.0 39 .................................... CTCTCCGTCGCCCGTGCGGCGGTGGCACTGGCCGGACAC 82622 36 100.0 40 .................................... AGGTGGACCCCGGCTACGCCACCATGGACAACGGCCTCCA 82698 36 100.0 41 .................................... CCGATGTATCCGCTGATGCTCACCAGCCCCTGCGCACAGGT 82775 36 100.0 35 .................................... AAGCGGTCGCGGTTGCTGATGTGGGAGGTCATCCG 82846 36 100.0 37 .................................... GTGGAGGGATTCGAACCCTCTCAGCGTCACGCAACGG 82919 36 100.0 40 .................................... TGGCGAAGAAGAACACGCCGTACGGCATCGACCCGAACGA 82995 36 100.0 37 .................................... CCCACTGCTCGGCCAGGTCTCGTACCGCATCGTCGGC 83068 36 100.0 35 .................................... GGCCTGGTACCAGCGCATGCCGGGCGCGAAACTGC 83139 36 100.0 40 .................................... CTCCGGCCCAGTAGGCATACGGACGGCCAGTTCCTCGCGT 83215 36 100.0 37 .................................... GAAGAGCCGACTCGGCCGTACGCGCCGTGTTTCATTA 83288 36 100.0 36 .................................... AGGCTTGAACCCCTTCGAAGGCTTTCCAGTAATTCC 83360 36 100.0 40 .................................... TCGATGCGTGGCAGGCGTTCGCAAGCGTCGCCAAGGTCGA 83436 36 100.0 36 .................................... TGCGGCCCGTTCGTCGATGCGGGCCTTCACCGCCTC 83508 36 100.0 44 .................................... CTGTCGATGACCGCTCTGCCGACCGCGATCCTGCTGGGGATCGC 83588 36 100.0 39 .................................... GATGGCTCTCTTCGGTGCCGTGCTGGCCGGGATCGTCAA 83663 36 100.0 37 .................................... GCAGATCGACGTTGTGGCCGGACGGCACGACGACCGG 83736 36 100.0 35 .................................... TCCGCCGCCGTGTCGGCGGGCGCCTTGGCAGTGAA 83807 36 100.0 37 .................................... GGCCGATGTCGCCCGCCGAGCTGGCCGCGCGCAAGTG 83880 36 100.0 39 .................................... GTCGGCGTCGATGTGGTCTTCGGGTAGGGCGCAGACGCT 83955 36 100.0 40 .................................... TGAAACGCGAACACGTCACCGTGTCGCACGGACGGATCAT 84031 36 100.0 34 .................................... GAAGCATCATGCCGTCAGCGCCCAGGACGGGGCC 84101 36 100.0 35 .................................... TCGGGTCCAGGTCCACGGTGGTACGGACCGACTTG 84172 36 100.0 40 .................................... TGCTGCTCCCGGCCGACGCCACCGCCACCGCCAGGGCCGA 84248 36 100.0 38 .................................... GATCAGCGCCATCCCAGGCTGGTCCCAACCGCCACGGT 84322 36 100.0 39 .................................... GTCATGATGTCCTCCGATTGTGTGGTGTGCCGTTCCGTT 84397 36 100.0 36 .................................... GTTGGAGTGCATGCCAGCGCTCGACCTGATCGCCAA 84469 36 100.0 35 .................................... CCGAAGCAGCCCCGCCCGTGGATGCACCTGACCCG 84540 36 100.0 40 .................................... CCGCTCGGCAACCTGCCGACAGTGCGGGGTGCAGCACTAC 84616 36 100.0 37 .................................... CCAGCGTGGCAATGAGGGCGGCCAGGGCGGCCGTGGC 84689 36 100.0 38 .................................... CGCAGCGCGTCACGGCGGCGGGCGGATGAGTCGATGAG 84763 36 100.0 36 .................................... GGACTCGGCCAGGCTCGCGGCCACCCGGTCCATGTC 84835 36 100.0 41 .................................... CACCGGCCACCCGCACCGGCAGGATCCCGCCGAGTGCCACC 84912 36 100.0 37 .................................... GATCACCGGCCAAGGAGGGTCCGTTGTCCGGCAAGGG 84985 36 100.0 39 .................................... CGGCCGACGCTTCCCGCTCCGCCTCGGCGGTGCGCTCTT 85060 36 100.0 39 .................................... ACTGACAAACCCGTCAGTTCGCGCAAAGCTGCTTGAAGC 85135 36 100.0 35 .................................... CTGGCGTCCAGCGATGCCAGCAGCCCGCCGGGGTA 85206 36 100.0 37 .................................... CCAGAACACCGGACCCGTCCAGCTTCGGTTCGGCGGA 85279 36 100.0 37 .................................... AGTGGTACGACCTAGTCTGGACCCACGAGGCCGTCAC 85352 36 100.0 39 .................................... GAGTAACCAACACGCCCCCCCTAGGTAGGGGGTCGAGTT 85427 36 100.0 40 .................................... CCGCCACCCAGCTCGCCGACGCCCAGGCCGCGTACACCGC 85503 36 100.0 36 .................................... TCGCGTACTGAGAGGGGGGCCGATGACGATCTATTT 85575 36 100.0 38 .................................... GGGCCTGGCGACGGGCAGGTCGAGACCGACGGCACGGT 85649 36 100.0 37 .................................... GCCGGGGCGTTGGAGCTGCTGGACATGGTGTGCCCGG 85722 36 100.0 32 .................................... CCGGCCACATCTCGTGGCACAACTCGACCGGG 85790 36 100.0 39 .................................... GTCGAAGATGGCACCCGACGCGGGCGCCGGCTTGCCCTG 85865 36 100.0 38 .................................... CTGCGCGACCCGTCGATCCGGCAGACCATCGACGACGA 85939 36 100.0 39 .................................... CGGCGGACCGGCGATCACCATCGGCACGGCCACCGTCTC 86014 36 100.0 37 .................................... CTGCCCGTTCCGAGGGCTCCCCCGCCTACATCGACCT 86087 36 100.0 35 .................................... CTCCGCTGCGCTGCGTTCCTCGCACTCACCGGTCC 86158 36 100.0 42 .................................... GTTCTTCTCCTTGTTGCGGTTGGTGAGTGGATCCGCCGGGTT 86236 36 100.0 39 .................................... TCCAGCATCATGTCAGCACTCCCCGGTCAGGTCGGCCAC 86311 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 56 36 100.0 38 GCCTCAATGAAGGGCAGCTCCGTCGGGAGCTGCGGC # Left flank : CGTGCTGCGGCGAATCGGGACCAAGCCGACCCGCACCGCAGCCGCGCAGCGGCGAGGAGGGGAAGCGGCGCGGTAGGGCCTTTCTGGGCCAAGCGGCTGCGACGGGCAGGACTGCGTGCGCCGCATCCGCGATCTTGAGCAGCGACCTGTGCAAGATCAGCTGTACCCAGCTCTGCACTCCAACGAGTACCCCGACAACCGCTGCGGCGGCACCGGCGCTGCCTCGCCCGCCAAATACTTCCGCACCGTCTTACGATCCAGCCCGGTGTCCCGAGCGATCTGCGACAGACTCAGCCCCGCCTCGTGCAGCGCACGGTACCGGCGCAGTTCCAGCCACCGCTCCGACCGCAGAACCATCGCCGCCCTCCACCCCAGCTCATACCGGGCGAAGCATTACTCATCGGACACCCCACCAAACCACCGCCACGCCGCGACCTGGCCACGTTCATCCGTACCTACCTGGGGAAACCAACCCGTACGCCGACAGACGTCGTCGACCT # Right flank : CTGGGGCAAGATTTTAACCGCCCTGACCTGCACCTGAACCGGTCTGCCGCGAAGGGTGCGCTTCCTGCAAGGCGGAGTAGCACCTCAAGTCCATGAACCAGCGCGCACCTACACGTAGTGAGCTGGGATGACATCCTTGCGACGGGTCCGCGCTCAGAGGCGGGACGACGCAGGCTTCGCCGGTGGTTCAGAGGATCGCTGGGCCGTGGTCGGTGATGGTGCGGCTGCAGCCGATCACGTCGAGCGATCGACGGTTGTTCGCGCGGAGGGTACCCAGGTTGCAGAACAGGACGGAGTCTGTGCCCTCGTCGATCATGTCGGTGAGTTGGGTGCGGAGCCGTAGGAACTTTGCTGGCCGGGTGTCCACGATGAACACGCTGTACTGTACGCGGTCGCCGTATGATTCGAGTTTCTTGGCGACCTTCGTTCGGCGGACATCGTCGGAAATGTCGTACGCGATGAGGTAGCGCCGCACGTCATCAAGGCTCATCGGGTCTTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCAGCTCCGTCGGGAGCTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 102152-100870 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFU01000020.1 Micromonospora craniellae strain LHW63014 scaffold20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 102151 36 94.4 35 C..G................................ CCGAGGTACGGCGGTGCCCACAGCTGCTCACGCTC G [102147] 102079 36 100.0 38 .................................... GTCGACGTGACGGCCACGCCGTCGCGGCGGGTCGTGGA 102005 36 100.0 38 .................................... TCCCGCTCCCGGATCAGGGCGGCGATGCCGTCGCGGGT 101931 36 100.0 37 .................................... CTGACATCACCGATCCGACAAGCGCCGCCGCCTGGAC 101858 36 100.0 38 .................................... GCGTGCGCGATCGGCGCGGGTGAGGCGTGCACGCTGAT 101784 36 100.0 40 .................................... CCCGGGGCGGCATGGCCTGCCAGGTCATGCCCTCTTCGGG 101708 36 100.0 36 .................................... CAGCAACCACCCGATGTGCCACGACTGGTCAAGGGC 101636 36 100.0 39 .................................... CGCCGGGCCTGTGGACAACCCCGCCGCGACTCCGCCGAT 101561 36 100.0 38 .................................... GTGGCAGACCCCCCGGAAGGCGTTGGCGTATGTCACCG 101487 36 100.0 37 .................................... CTGACCAGCACCAACACGGAACCGGCCGGGGGAGAGG 101414 36 100.0 34 .................................... AGAACCGGAAGACGGCCACCAGCACGTACGACGG 101344 36 100.0 38 .................................... GCGCTATGACAAGGGGGACCTTCCGTGGCGTTCATATC 101270 36 100.0 39 .................................... AGCCGTGTCATCTCTGTGGCGGACGTCCTTGACGTGGGT 101195 36 100.0 33 .................................... AGTCCACCTCGTCGACGCCGCTCCGGCGACGGC 101126 36 100.0 39 .................................... GTTGATCGTGCGGGACGCGGACAGCGTGCGGGAGGGCTG 101051 36 100.0 35 .................................... CCGTCGACGCGCTGATCGGGCAGATCCTGCGGGTC 100980 36 100.0 39 .................................... TTCATCAGCTTCCGCGACAACCACCAAGTCCGCTTTTCG 100905 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 18 36 99.7 37 GCCTCAATGAAGGACGGCTCCGGTGGGAGCTGCGGC # Left flank : CCCGATCGGCAAGCGCGTCGACCGTCATCTGATGCGCTGGGCAAGGTGGAAGTACAAGCGACTCAAACCCAGCCAAGCCCGTACGCGTGCATGGTTACAAGAGGTCCGAAAACGAAAACCCGGCCTGTTCGCGCACTGGACGCTGCGGTACACGACCTGACAACCGAACGGCACGAGCCGGATGAGTCGAGAGGTTCACGTCCGGATCTGTGGGGGACGGCGGGTGAGACTCCCGCCGTCT # Right flank : TGGGTCAAAATTCTAACCGCCCTGAGCTGCGCCTGAACGGGTGTGCCGCGAAGGGTGCGCTTTCTGCCAGGTCGAGAGCGACTCATGGCCATGACTCCGCCCACGCCATGCGGCATGTGAGCTGGGCCGACACTCTGGCGACGGGTCCGCGCTCAGAGGCGGGACGACAGAGGCGTCGCTGGCGCATGGGCCAACAGATTCACTGGTGCGCGGCCGGTAATGGTTGCGGCTGCGCGATCCATTGATCGAATTGCATCAGAAGGCGGTCGGTTGCAGCCATCCTCCGATTGGTGCTGGTGCGTCGAACGCTCGTGGGATGAAGTCGGGAGGTTGGTCACGCCATCCTGGTTGCGGGCTGATCCAGTGCCTTGATCGGCTGGCGTCCGGTGTCGGTCAGCGGTGATGCATCCACGTCCGGGTGATTGCACCTCCAATCGCCGGCTTGTCAGGATGGGTGCCGACTTCTCATGTTGGGCGGACTGTTGGATTTCTCTCTCTCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGACGGCTCCGGTGGGAGCTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //