Array 1 50814-51137 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPDS010000019.1 Roseburia faecis strain D53t1_180928_E1 NODE_19_length_71941_cov_25.6803, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 50814 36 100.0 36 .................................... TTGCTAATTGCATTGGTGATGGCGCAAGTATTTGTA 50886 36 100.0 33 .................................... AAATGAGATCTTTTACCTGGTCCTCGAAAGCAT 50955 36 100.0 37 .................................... ACTTTAATTCCAAACATTTCGAATAAATCCATTTTTC 51028 36 97.2 37 ...................................T GATAACTCGAGATTGAAAGCAGGAGCAACGACAAGAA 51101 36 72.2 0 .....A.....GA.A.....AA........A.GT.T | A [51121] ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 93.9 36 ATTGAGAAATAAGATCCCCGGGAAGGGGACGGAAAC # Left flank : ATTTCAACAGGTTTGCAATCAGTATTTTTACAGCCGGTTTCACCGCACCGTTACAGCGGGACATGCTGTATTTTTGGGAGGAGGCTGTGGATTCCTTTCCAAGACGATTTTGTATGCACTGTTTGGTGAGAATGCGGTAATGGTGGTAGATCAGGTGTTTAAAAATACATTGGGACGCCAATACAGTGTGCATAAACATCAGAAAGATATCGGATGGAAGATCGCGCCACATGTTTGTAAGTGTACGACGTATCAGGGAAAATTATATGATATGGGAATTGGACAAATTTCGTATGAAGAAAATTGATAGATTTATATCGAAAAGATTGATATAATGAGGATAGTTTCCAAAGAGATAGAACTTAATTTTGCGCCGATGCCTGAAAATACTGGAGTTTTGGCTTTTTTAAGGCGAAAGAAGTTTATTCCAAAGTCGGATTTGGTTTTGCGCCGCAATTCGGCTTTGGAATCCAGTTAAGATCAGGCATGTAAAGGACAGG # Right flank : TACATTTAAAATGGGGAAGGGGTGTGAAAAATGAGCTATTTATATGTATGTGAACAAGGGGCAACAATCGGAATTACCGAAAATCGCTTTCAGGTAAAGTACAAAGATGGAATGGTAAAAAGCATACCTGCAGAGACCTTGGAAGTAATTGAGATATTTGGAAAAATACAAATTACTACACAATGTATAACGGAATGTCTGAAACGTGGCGTAAATATTTTGTTTTATTCTACGAAGGGTGCTTATTTTGGAAGACTGATTTCTACTAATCATGTTAATGTTCAAAGGCAACGTTTGCAGGCAGCAGTGACGGAGGATGAGCAATTTAAGCTGGATTTTTCCAAACGTATTATCAATGCAAAAATTCGCAATCAAATCGTGATTTTGCGAAGATATGCGAGAAATCAGGAAGCGGATATTCAGCGTGCAGTGATTGAAATGCAGAATATGTACCAGAAACTCGATATGGCACAGAGCATTGAACAAGTGATGGGATTTGA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGAAATAAGATCCCCGGGAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 149082-147454 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPDS010000003.1 Roseburia faecis strain D53t1_180928_E1 NODE_3_length_206698_cov_24.8336, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 149081 32 100.0 34 ................................ CGAAACTTGCCACAGCAATGCGACAGCTTATGTC 149015 32 100.0 35 ................................ AATAAACTGCCGTTTAAATCACTTAACTGTTTCGC 148948 32 100.0 34 ................................ AACAAGTTGCCCTTTAACCCATCTGTCGGAGTCA 148882 32 100.0 34 ................................ CAAAAAACGTGTAACAAACGTGCAATTATCTGCG 148816 32 100.0 34 ................................ TGTATCATGGCAGTGTTAAGCGCAATAAACTCTT 148750 32 100.0 33 ................................ AAACTACTATTTATCATATACACCACCTACAAA 148685 32 100.0 33 ................................ GAATTTAATGATGTTTCTTTTGTTTGGTTTTCC 148620 32 100.0 34 ................................ TGCTATGAAAGAACTGAAGGACCTTGTAAATACT 148554 32 100.0 35 ................................ ATATCCTTTCGAGGAGGTGGCATGCATGAGTGATT 148487 32 100.0 35 ................................ GTTAGCGAGATAATTGCTTACAAGAATTACTGCTA 148420 32 100.0 35 ................................ AAAATACAGATTTGGAAAAAATGTTGATCAACCCT 148353 32 100.0 35 ................................ AGAAGTAATGTCCCTACATACATTGCCGTATTCAT 148286 32 100.0 35 ................................ TCCGTTTACAACGTATGAGCCTTTACAGATGTAAT 148219 32 100.0 35 ................................ ATAGCAACCATTGCATTGGCACCCAGTGCAATTCA 148152 32 100.0 36 ................................ TCTGTCGTATCTGTTACAGTTAGTTGGTATAGTTGC 148084 32 96.9 34 ............A................... TTATAAAAAATACATTTGGTATAAAATTTGACAG 148018 32 100.0 35 ................................ GGTTTGTTTATGCTGCTAAAATCACAGGAGAAGTT 147951 32 100.0 36 ................................ CCAGTTTATCAGCTATGCCACCTCCACCACCGCCTC 147883 32 100.0 35 ................................ AAAAGATATCCAACCTTTAACACTTACTAAAAACC 147816 32 100.0 35 ................................ GTCTGTAAATCCTACAGCCTCGAATCCCGGTGCTT 147749 32 96.9 34 .............T.................. TCCGGACTGCTGCGCCTGGTTTCCTGTGCTCTTT 147683 32 100.0 35 ................................ TTCTGTCACGATCCACATCATCACAGACGTAGTAC 147616 32 100.0 34 ................................ TGTGAATCTTTTTGCGAATCCTTTTGTGAATCCT 147550 32 96.9 33 .............T.................. TTGTCTTTATTGTCGTCACCGTCGTCGGGATCA 147485 31 90.6 0 .............T......A...-....... | C [147458] ========== ====== ====== ====== ================================ ==================================== ================== 25 32 99.3 35 GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAT # Left flank : CCGGTATTTTTATGGAAATGAGGAATCCAAATGCTTGTTTTAATTACTTATGATGTAAATACGGAGACGGCTGCAGGAAAAGGCCGCTTGCGAAAAGTGGCAAAACAGTGTGTAAATTATGGAAGACGCGTTCAGAATTCGGTGTTTGAATGTATTCTGGATAATGCACAATGTGTGCTGTTAAAGTCGATATTAACGGATATTATTGATGAAAGTGTGGATAGTTTGCGATTTTACTATCTGGGAAATAATTATCACACAAAAATTGAACACATAGGTGTTGATCGGGGAATTGCTGCGGATCAGACGCTTATATTGTAAGGACTATGGTGCGAACGGAAAGTACACATAAAATACTGGAGGGATTCGCACTTGAAATATTAAATAAAAGGCATTGAAATGACATTTCTATGAATAGATAGAGATGGTTATTTTATGTTATTGCTGACAAAATATACAGTATTATACAAAGAAAATGAAATTTGTTGTATAATATTGCT # Right flank : GCCGTCCAAAATCAGACTGGCATTATGCCGAAAGCCAGATAGTTCCTTTTTTTCTCAAAATCAGGCAGTTTCCGGGATTTTCCGTAAAGTTATGCACATCATGATGATGTCATGCTCAACTATCCCCGGACAACGCACCCCATGATTTCACATCTGTGGATATCTTCCGTCAACAGCCTGCTGCGGCTGTAGAAAAATTTTTCAAAATCTACATATTGCACAAATCAGTAATCCCTGTCTTTCGCAGGCTGTATCGCTTTCGGCTGGTCAATGGAAAGTCCTTCCATCAGCCAGCGGAATTCCTGCCTTGTCAGGGGTCTGACTTCTGAAGCATTGCGTGGCCATTGGAATTTTCCATTGTCCAGGCGCTTCTGCAGGAGTACAAATCCATCCCGGTCAAAATAGAGGGCTTTCATCGTATTCTTTTTGCGTCCACAGAACAGAAAGACCGCATTGGAGAACGGATACATCTGGAAATTGTCACGGATGACTGCCATGAG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.80,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //